# Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

## Documentation for package ‘BaSTA’ version 2.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BaSTA-package | BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.
BaSTA | BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.
basta | Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.
basta.default | Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.
bastaCensDat | Example of census data for BaSTA analysis.
bastaCensOut | Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.
bastaCMRdat | Example of capture-mark-recapture data for BaSTA analysis.
bastaCMRout | Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.
CensusToCaptHist | Constructs a capture-history matrix from repeated individual observations to be used in Bayesian Survival Trajectory Analysis (BaSTA).
coef.multibasta | Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.
DataCheck | Error checking for BaSTA input data.
FixCMRdata | Fix issues on CMR input data for BaSTA.
multibasta | Function to run multiple BaSTA models on the same dataset.
plot.basta | Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
print.basta | Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
print.bastaCheckCens | Summary of outputs from the data checking function in BaSTA.
print.bastaCheckCMR | Summary of outputs from the data checking function in BaSTA.
print.multibasta | Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.
summary.basta | Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
summary.bastaCheckCens | Summary of outputs from the data checking function in BaSTA.
summary.bastaCheckCMR | Summary of outputs from the data checking function in BaSTA.
summary.multibasta | Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.