Visualization of Viral Protein Sequence Diversity Dynamics
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Documentation for package ‘vDiveR’ version 2.0.1
Help Pages
| concat_conserved_kmer | k-mer sequences concatenation |
| extract_from_GISAID | Extract metadata via fasta file from GISAID |
| extract_from_NCBI | Extract metadata via fasta file from ncbi |
| json2csv | JSON2CSV |
| JSON_sample | DiMA (v5.0.9) JSON Output File |
| metadata | Metadata Input Sample |
| metadata_extraction | Metadata Extraction from NCBI/GISAID (EpiFlu/EpiCoV/EpiPox/EpiArbo) FASTA file |
| plot_conservation_level | Conservation Levels Distribution Plot |
| plot_correlation | Entropy and total variant incidence correlation plot |
| plot_dynamics_protein | Dynamics of Diversity Motifs (Protein) Plot |
| plot_dynamics_proteome | Dynamics of Diversity Motifs (Proteome) Plot |
| plot_entropy | Entropy plot |
| plot_time | Time Distribution of Sequences Plot |
| plot_world_map | Geographical Distribution of Sequences Plot |
| proteins_1host | DiMA (v5.0.9) JSON converted-CSV Output Sample 1 |
| protein_2hosts | DiMA (v5.0.9) JSON converted-CSV Output Sample 2 |