Calculate Distance Measures for a Given List of Data Frames with Factors

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Documentation for package ‘cmahalanobis’ version 0.5.0

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cbhattacharyya Calculate the Bhattacharyya distance for each species.
cbraycurtis Calculate the Bray-Curtis distance for each species.
ccanberra Calculate the Canberra distance for each species.
ccbhattacharyya Calculate the Bhattacharyya distance for each species.
cchebyshev Calculate the p_values matrix for each species, using Chebyshev distance as a base.
ccosine Calculate the Cosine distance of a factor in a dataframe.
ceuclide Calculate the Euclidean distance of a factor in a dataframe.
chamming Calculate the Hamming distance of a factor in a dataframe.
chellinger Calculate the Hellinger distance for each species.
cjaccard Calculate the Jaccard distance for each species.
cmahalanobis Calculate the Mahalanobis distance for each species.
cmanhattan Calculate a Manhattan distance of a factor in a dataframe.
cminkowski Calculate the Minkowski distance of a factor in a dataframe.
csorensendice Calculate the Sorensen-Dice distance for each species.
generate_report_cbhattacharyya Generate a Microsoft Word document about the Bhattacharyya distance matrix and the p-values matrix with corresponding plots.
generate_report_cbraycurtis Generate a Microsoft Word document about the Bray-Curtis distance matrix and the p-values matrix with corresponding plots.
generate_report_ccanberra Generate a Microsoft Word document about the Canberra distance matrix and the p-values matrix with corresponding plots.
generate_report_cchebyshev Generate a Microsoft Word document about the Chebyshev distance matrix and the p-values matrix with corresponding plots.
generate_report_ccosine Generate a Microsoft Word document about the Cosine distance matrix and the p-values matrix with corresponding plots.
generate_report_ceuclide Generate a Microsoft Word document about the Euclidean distance matrix and the p-values matrix with relative plots.
generate_report_chamming Generate a Microsoft Word document about the Hamming distance matrix and the p-values matrix with corresponding plots.
generate_report_chellinger Generate a Microsoft Word document about the Hellinger distance matrix and the p-values matrix with corresponding plots.
generate_report_cjaccard Generate a Microsoft Word document about the Jaccard distance matrix and the p-values matrix with corresponding plots.
generate_report_cmahalanobis Generate a Microsoft Word document about Mahalanobis distance matrix and p-values matrix with corresponding plots.
generate_report_cmanhattan Generate a Microsoft Word document about the Manhattan distance and the p-values matrices with corresponding plots.
generate_report_cminkowski Generate a Microsoft Word document about the Minkowski distance matrix and the p-values matrix with corresponding plots.
generate_report_csorensendice Generate a Microsoft Word document about the Sorensen-Dice distance matrix and the p-values matrix with corresponding plots.
pvaluescbatt Calculate the p_values matrix for each species, using Bhattacharyya distance as a base.
pvaluescbrcu Calculate the p_values matrix for each species, using Bray-Curtis distance as a base.
pvaluesccanb Calculate the p_values matrix for each species, using Canberra distance as a base.
pvaluesccheb Calculate the p_values matrix for each species, using Chebyshev distance as a base.
pvaluesccosi Calculate the p_values matrix for each species, using Cosine distance as a base.
pvaluesceucl Calculate the p_values matrix for each species, using the Euclidean distance as a base.
pvalueschamm Calculate the p_values matrix for each species, using Hamming distance as a base.
pvalueschell Calculate the p_values matrix for each species, using Hellinger distance as a base.
pvaluescjacc Calculate the p_values matrix for each species, using Jaccard distance as a base.
pvaluescmaha Calculate p_values matrix for each species, using Mahalanobis distance as a base.
pvaluescmanh Calculate the p_values matrix for each species, using Manhattan distance as a base.
pvaluescmink Calculate the p_values matrix for each species, using Minkowski distance as a base.
pvaluescsore Calculate the p_values matrix for each species, using Sorensen-Dice distance as a base.