# Cross-Species Analysis of Cell Identities, Markers and Regulations

## Documentation for package ‘CACIMAR’ version 1.0.0

- DESCRIPTION file.

## Help Pages

CACIMAR_cols | CACIMAR colors palette
Format_Markers_Frac | Format marker genes for plotting
Heatmap_Cor | plot the heatmap of marker genes across different species
Identify_CellType | Identify cell type of each cluster
Identify_ConservedCellTypes | Identify conserved cell types based on power of genes and orthologs database
Identify_ConservedMarkers | Identify orthologs marker genes for two species
Identify_ConservedNetworks | Identify conserved regulatory networks
Identify_Markers | Identify markers of each cluster
OrthG_Hs_Ch | Orthologs genes database for homo sapiens and zebrafish
OrthG_Hs_Mm | Orthologs genes database for homo sapiens and mus musculus
OrthG_Hs_Zf | Orthologs genes database for homo sapiens and zebrafish
OrthG_Mm_Ch | Orthologs genes database for mus musculus and chicken
OrthG_Mm_Zf | Orthologs genes database for mus musculus and zebrafish
OrthG_Zf_Ch | Orthologs genes database for mus zebrafish and chicken
Plot_MarkersHeatmap | Plot Markers in each cell type