# UK Biobank COVID-19 Data Processing and Risk Factor Association Tests

## Documentation for package ‘UKB.COVID19’ version 0.1.4

- DESCRIPTION file.
- Package NEWS.

## Help Pages

comorbidity_asso | Generate comorbidity association result file
comorbidity_summary | Create comorbidity summary file
covid_example | Provide working directory for UKB.COVID19 example files
data_reform | Reform variables
log_cov | Perform association tests between phenotype and covariates
makeGWASFiles | Generate files for GWAS Software. SAIGE and Plink currently supported.
makePhenotypes | Generate COVID-19 phenotypes
risk_factor | Generate covariate file
sampleQC | Sample QC for genetic analyses
variantQC | Variant QC for Genetic Analyses