Modern Measures of Population Differentiation
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Documentation for package ‘mmod’ version 1.3.3
Help Pages
| mmod-package | Modern Measures of Differentiation |
| as.genind.DNAbin | as.genind.DNAbin |
| chao_bootstrap | Produce bootstrap samples from each subpopulation of a genind object |
| diff_stats | Calculate differentiation statistics for a genind object |
| diff_test | An exact test of population differentiation for genind objects |
| dist.codom | Calculate distance between individual for co-dominant locus |
| D_Jost | Calculate Jost's D |
| Gst_Hedrick | Calculate Nei's Gst using estimators for Hs and Ht |
| Gst_Nei | Calculate Nei's Gst using estimators for Hs and Ht |
| harmonic_mean | Harmonic mean |
| jacknife_populations | Create jacknife samples of a genind object by population |
| mmod | Modern Measures of Differentiation |
| pairwise_D | Calculates pairwise values of Jost's D |
| pairwise_Gst_Hedrick | Calculates pairwise values of Hedrick's G'st |
| pairwise_Gst_Nei | Calculates pairwise values of Nei's Gst |
| Phi_st_Meirmans | Calculate Phi_st from a genind object |
| rgenotypes | Randomly create genotypes |
| summarise_bootstrap | Apply a differentiation statistic to a bootstrap sample |