Simplex-Structured Matrix Factorisation for Metabolomics Analysis


[Up] [Top]

Documentation for package ‘MetabolSSMF’ version 0.1.0

Help Pages

bootstrap Bootstrap algorithm function.
diversity Shannon diversity index
fit_boot Example results of bootstrap.
fit_gap Example results of gap statistic.
fit_SSMF Example results of SSMF.
gap Gap statistic algorithm.
init Initialise the membership matrix H or prototype matrix W.
sARI Soft adjusted Rand index.
SimulatedDataset A simulated metabolomic dataset.
SimulatedMemberships A simulated membership matrix.
SimulatedPrototypes A simulated prototype matrix.
ssmf Simplex-structured matrix factorisation algorithm (SSMF).