Multi-Species N-Mixture (MNM) Models with 'nimble'


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Documentation for package ‘MultiNMix’ version 0.1.0

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AIC-method AIC Method for "MNM" Class
BIC-method BIC Method for "MNM" Class
birds Birds Dataset - Subset of the North American Breeding Bird Survey Dataset
birds_ZI Zero-Inflated Birds Dataset - Subset of the North American Breeding Bird Survey Dataset
check_convergence Convergence Check Generic Function
check_convergence-method Convergence Check for "MNM" Class
density-method Density Plot Method for "MNM" Class
distribution_args List of Valid Nimble Distributions and Their Arguments
logLik-method Log-Likelihood Method for "MNM" Class
MNM Fit a Multi-Species N-Mixture Model (MNM) using Nimble
MNM-class Multi-Species N-Mixture (MNM) Model Class
MNM_AR Fit a Multi-Species N-Mixture Model with AR-1 Using Nimble
MNM_control Generate Nimble Code for Multi-Species N-Mixture (MNM) Models
MNM_fit Fit a Multi-Species N-Mixture (MNM) Model in Nimble
MNM_Hurdle Fit a Multi-Species N-Mixture Model with Hurdle Component using Nimble
MNM_Hurdle_AR Fit a multi-species N-mixture (MNM) Hurdle-AR model using Nimble
predictY Predict Fitted Values for "MNM" Class
predictY-method Predict Fitted Values for "MNM" Class
simulateData Simulate Data for Multi-Species N-Mixture Models
tracePlot Trace Plot Generic and Method for "MNM" Class
tracePlot-method Trace Plot Generic and Method for "MNM" Class
validate_all_priors Validate User-Specified Priors for Nimble Models
validate_prior Validate User-Specified Prior for a Single Prior