# Graphics in the Context of Analyzing High-Throughput Data

## Documentation for package ‘wrGraph’ version 1.3.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

.addTextToPoints | Add text to points on plot
.bestLegendLoc | Search best corner of plot for placing for legend This function aims to find best corner for plotting a legend.
.colorByPvalue | Colors based on p-Values
.determFigMargPix | Estimate size/distance of margin to edge of image (png) in pixels
.levIndex | Transform levels into index
.predPointsPix | Predict and return pixel location of points of current plot
.sampNoDeMArrayLM | Locate sample index from index or name of pair-wise comparisons
.serachColName | Search Column Name This function provides help when seraching column names
addBagPlot | Add bagplot to existing plot
checkForLegLoc | Find best place on plot for placing legend
convertPlotCoordPix | Convert points of plot to coordinates in pixels
cumFrqPlot | Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series)
foldChangeArrow | Add arrow for expected Fold-Change to VolcanoPlot or MA-plot
histW | Histogram (version by WR)
imageW | Display Numeric Content Of Matrix As Image
legendHist | Add histogram to existing plot
MAplotW | MA-plot (differential intensity versus average intensity)
mouseOverHtmlFile | Create mouse-over interactive html-pages (with links)
partitionPlot | Make matrix for layout to partition plotting area
plotBy2Groups | Separate and plot data by 2 groups
plotLinReg | Plot linear regression and confidence interval of regression
plotPCAw | PCA plot with bag-plot to highlight groups
plotW2Leg | x-y plot with 2 legends
profileAsClu | Plot profiles according to CLustering
staggerdCountsPlot | Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used
vioplotW | Violin-Plots Version W
VolcanoPlotW | Volcano-Plot (Statistical Test Outcome versus Relative Change)