Last updated on 2025-01-23 19:49:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.5 | 38.55 | 125.06 | 163.61 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.5 | 25.60 | 90.91 | 116.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.5 | 156.22 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.5 | 267.45 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.5 | 43.00 | 135.00 | 178.00 | ERROR | |
| r-patched-linux-x86_64 | 2.0.5 | 35.12 | 115.65 | 150.77 | ERROR | |
| r-release-linux-x86_64 | 2.0.5 | 34.97 | 117.00 | 151.97 | ERROR | |
| r-release-macos-arm64 | 2.0.5 | 80.00 | NOTE | |||
| r-release-macos-x86_64 | 2.0.5 | 118.00 | NOTE | |||
| r-release-windows-x86_64 | 2.0.5 | 39.00 | 135.00 | 174.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.0.5 | 93.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.0.5 | 156.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.0.5 | 47.00 | 182.00 | 229.00 | ERROR |
Version: 2.0.5
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.0.5
Check: dependencies in R code
Result: WARN
Missing or unexported objects:
‘shapr::feature_matrix_cpp’ ‘shapr::observation_impute_cpp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in ‘PPtreeregViz-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PPshapdependence
> ### Title: Dependency plot
> ### Aliases: PPshapdependence
>
> ### ** Examples
>
> data(dataXY)
> testX <- dataXY[1,-1]
> Model <- PPTreereg(Y~., data = dataXY, DEPTH = 2)
> shap_long <- ppshapr_prep(Model, final.rule =5, method="simple")
Error: 'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘PPtreeregViz.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16562 bytes
Input file size = 17444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
Output IDAT size = 15344 bytes (1218 bytes decrease)
Output file size = 15422 bytes (2022 bytes = 11.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47467 bytes
Input file size = 47605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
Output IDAT size = 39218 bytes (8249 bytes decrease)
Output file size = 39296 bytes (8309 bytes = 17.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52857 bytes
Input file size = 53007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
Output IDAT size = 44611 bytes (8246 bytes decrease)
Output file size = 44689 bytes (8318 bytes = 15.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52041 bytes
Input file size = 52191 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
Output IDAT size = 43880 bytes (8161 bytes decrease)
Output file size = 43958 bytes (8233 bytes = 15.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20953 bytes
Input file size = 21055 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
Output IDAT size = 14909 bytes (6044 bytes decrease)
Output file size = 14987 bytes (6068 bytes = 28.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11346 bytes
Input file size = 11436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
Output IDAT size = 8725 bytes (2621 bytes decrease)
Output file size = 8803 bytes (2633 bytes = 23.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51223 bytes
Input file size = 51373 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
Output IDAT size = 40196 bytes (11027 bytes decrease)
Output file size = 40274 bytes (11099 bytes = 21.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54985 bytes
Input file size = 55135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
Output IDAT size = 39743 bytes (15242 bytes decrease)
Output file size = 39821 bytes (15314 bytes = 27.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55451 bytes
Input file size = 55601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
Output IDAT size = 40315 bytes (15136 bytes decrease)
Output file size = 40393 bytes (15208 bytes = 27.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45002 bytes
Input file size = 45140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
Output IDAT size = 33628 bytes (11374 bytes decrease)
Output file size = 33706 bytes (11434 bytes = 25.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64994 bytes
Input file size = 65156 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
Output IDAT size = 47920 bytes (17074 bytes decrease)
Output file size = 47998 bytes (17158 bytes = 26.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30853 bytes
Input file size = 30967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
Output IDAT size = 23590 bytes (7263 bytes decrease)
Output file size = 23668 bytes (7299 bytes = 23.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42264 bytes
Input file size = 42402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
Output IDAT size = 31810 bytes (10454 bytes decrease)
Output file size = 31888 bytes (10514 bytes = 24.80% decrease)
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building ‘PPtreeregViz.Rmd’
SUMMARY: processing the following file failed:
‘PPtreeregViz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘PPtreeregViz.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16562 bytes
Input file size = 17444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
Output IDAT size = 15344 bytes (1218 bytes decrease)
Output file size = 15422 bytes (2022 bytes = 11.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47467 bytes
Input file size = 47605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
Output IDAT size = 39218 bytes (8249 bytes decrease)
Output file size = 39296 bytes (8309 bytes = 17.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52857 bytes
Input file size = 53007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
Output IDAT size = 44611 bytes (8246 bytes decrease)
Output file size = 44689 bytes (8318 bytes = 15.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52041 bytes
Input file size = 52191 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
Output IDAT size = 43880 bytes (8161 bytes decrease)
Output file size = 43958 bytes (8233 bytes = 15.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20953 bytes
Input file size = 21055 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
Output IDAT size = 14909 bytes (6044 bytes decrease)
Output file size = 14987 bytes (6068 bytes = 28.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11346 bytes
Input file size = 11436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
Output IDAT size = 8725 bytes (2621 bytes decrease)
Output file size = 8803 bytes (2633 bytes = 23.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51223 bytes
Input file size = 51373 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
Output IDAT size = 40196 bytes (11027 bytes decrease)
Output file size = 40274 bytes (11099 bytes = 21.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54985 bytes
Input file size = 55135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
Output IDAT size = 39743 bytes (15242 bytes decrease)
Output file size = 39821 bytes (15314 bytes = 27.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55451 bytes
Input file size = 55601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
Output IDAT size = 40315 bytes (15136 bytes decrease)
Output file size = 40393 bytes (15208 bytes = 27.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45002 bytes
Input file size = 45140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
Output IDAT size = 33628 bytes (11374 bytes decrease)
Output file size = 33706 bytes (11434 bytes = 25.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64994 bytes
Input file size = 65156 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
Output IDAT size = 47920 bytes (17074 bytes decrease)
Output file size = 47998 bytes (17158 bytes = 26.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30853 bytes
Input file size = 30967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
Output IDAT size = 23590 bytes (7263 bytes decrease)
Output file size = 23668 bytes (7299 bytes = 23.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42264 bytes
Input file size = 42402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
Output IDAT size = 31810 bytes (10454 bytes decrease)
Output file size = 31888 bytes (10514 bytes = 24.80% decrease)
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building ‘PPtreeregViz.Rmd’
SUMMARY: processing the following file failed:
‘PPtreeregViz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in ‘PPtreeregViz-Ex.R’ failed
The error most likely occurred in:
> ### Name: PPshapdependence
> ### Title: Dependency plot
> ### Aliases: PPshapdependence
>
> ### ** Examples
>
> data(dataXY)
> testX <- dataXY[1,-1]
> Model <- PPTreereg(Y~., data = dataXY, DEPTH = 2)
> shap_long <- ppshapr_prep(Model, final.rule =5, method="simple")
Error: 'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘PPtreeregViz.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16562 bytes
Input file size = 17444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15345
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15345
Output IDAT size = 15345 bytes (1217 bytes decrease)
Output file size = 15423 bytes (2021 bytes = 11.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47468 bytes
Input file size = 47606 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39209
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39209
Output IDAT size = 39209 bytes (8259 bytes decrease)
Output file size = 39287 bytes (8319 bytes = 17.47% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52857 bytes
Input file size = 53007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44607
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44607
Output IDAT size = 44607 bytes (8250 bytes decrease)
Output file size = 44685 bytes (8322 bytes = 15.70% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52040 bytes
Input file size = 52190 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43874
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43874
Output IDAT size = 43874 bytes (8166 bytes decrease)
Output file size = 43952 bytes (8238 bytes = 15.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20953 bytes
Input file size = 21055 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
Output IDAT size = 14909 bytes (6044 bytes decrease)
Output file size = 14987 bytes (6068 bytes = 28.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11346 bytes
Input file size = 11436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
Output IDAT size = 8725 bytes (2621 bytes decrease)
Output file size = 8803 bytes (2633 bytes = 23.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51230 bytes
Input file size = 51380 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40199
Output IDAT size = 40199 bytes (11031 bytes decrease)
Output file size = 40277 bytes (11103 bytes = 21.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54985 bytes
Input file size = 55135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
Output IDAT size = 39743 bytes (15242 bytes decrease)
Output file size = 39821 bytes (15314 bytes = 27.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55451 bytes
Input file size = 55601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
Output IDAT size = 40315 bytes (15136 bytes decrease)
Output file size = 40393 bytes (15208 bytes = 27.35% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45003 bytes
Input file size = 45141 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33625
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33625
Output IDAT size = 33625 bytes (11378 bytes decrease)
Output file size = 33703 bytes (11438 bytes = 25.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64991 bytes
Input file size = 65153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47914
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47914
Output IDAT size = 47914 bytes (17077 bytes decrease)
Output file size = 47992 bytes (17161 bytes = 26.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30853 bytes
Input file size = 30967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
Output IDAT size = 23590 bytes (7263 bytes decrease)
Output file size = 23668 bytes (7299 bytes = 23.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42264 bytes
Input file size = 42402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
Output IDAT size = 31810 bytes (10454 bytes decrease)
Output file size = 31888 bytes (10514 bytes = 24.80% decrease)
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building ‘PPtreeregViz.Rmd’
SUMMARY: processing the following file failed:
‘PPtreeregViz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘PPtreeregViz.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16562 bytes
Input file size = 17444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15345
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15345
Output IDAT size = 15345 bytes (1217 bytes decrease)
Output file size = 15423 bytes (2021 bytes = 11.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47468 bytes
Input file size = 47606 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39209
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39209
Output IDAT size = 39209 bytes (8259 bytes decrease)
Output file size = 39287 bytes (8319 bytes = 17.47% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52857 bytes
Input file size = 53007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44607
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44607
Output IDAT size = 44607 bytes (8250 bytes decrease)
Output file size = 44685 bytes (8322 bytes = 15.70% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52040 bytes
Input file size = 52190 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43874
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43874
Output IDAT size = 43874 bytes (8166 bytes decrease)
Output file size = 43952 bytes (8238 bytes = 15.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20953 bytes
Input file size = 21055 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
Output IDAT size = 14909 bytes (6044 bytes decrease)
Output file size = 14987 bytes (6068 bytes = 28.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11346 bytes
Input file size = 11436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
Output IDAT size = 8725 bytes (2621 bytes decrease)
Output file size = 8803 bytes (2633 bytes = 23.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51230 bytes
Input file size = 51380 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40199
Output IDAT size = 40199 bytes (11031 bytes decrease)
Output file size = 40277 bytes (11103 bytes = 21.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54985 bytes
Input file size = 55135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
Output IDAT size = 39743 bytes (15242 bytes decrease)
Output file size = 39821 bytes (15314 bytes = 27.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55451 bytes
Input file size = 55601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
Output IDAT size = 40315 bytes (15136 bytes decrease)
Output file size = 40393 bytes (15208 bytes = 27.35% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45003 bytes
Input file size = 45141 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33625
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33625
Output IDAT size = 33625 bytes (11378 bytes decrease)
Output file size = 33703 bytes (11438 bytes = 25.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64991 bytes
Input file size = 65153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47914
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47914
Output IDAT size = 47914 bytes (17077 bytes decrease)
Output file size = 47992 bytes (17161 bytes = 26.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30853 bytes
Input file size = 30967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
Output IDAT size = 23590 bytes (7263 bytes decrease)
Output file size = 23668 bytes (7299 bytes = 23.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42264 bytes
Input file size = 42402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
Output IDAT size = 31810 bytes (10454 bytes decrease)
Output file size = 31888 bytes (10514 bytes = 24.80% decrease)
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building ‘PPtreeregViz.Rmd’
SUMMARY: processing the following file failed:
‘PPtreeregViz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'PPtreeregViz.Rmd' using rmarkdown
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building 'PPtreeregViz.Rmd'
SUMMARY: processing the following file failed:
'PPtreeregViz.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘PPtreeregViz.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16562 bytes
Input file size = 17444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
Output IDAT size = 15344 bytes (1218 bytes decrease)
Output file size = 15422 bytes (2022 bytes = 11.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47467 bytes
Input file size = 47605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
Output IDAT size = 39218 bytes (8249 bytes decrease)
Output file size = 39296 bytes (8309 bytes = 17.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52857 bytes
Input file size = 53007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
Output IDAT size = 44611 bytes (8246 bytes decrease)
Output file size = 44689 bytes (8318 bytes = 15.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52041 bytes
Input file size = 52191 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
Output IDAT size = 43880 bytes (8161 bytes decrease)
Output file size = 43958 bytes (8233 bytes = 15.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20953 bytes
Input file size = 21055 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
Output IDAT size = 14909 bytes (6044 bytes decrease)
Output file size = 14987 bytes (6068 bytes = 28.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11346 bytes
Input file size = 11436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
Output IDAT size = 8725 bytes (2621 bytes decrease)
Output file size = 8803 bytes (2633 bytes = 23.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51223 bytes
Input file size = 51373 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
Output IDAT size = 40196 bytes (11027 bytes decrease)
Output file size = 40274 bytes (11099 bytes = 21.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54985 bytes
Input file size = 55135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
Output IDAT size = 39743 bytes (15242 bytes decrease)
Output file size = 39821 bytes (15314 bytes = 27.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55451 bytes
Input file size = 55601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
Output IDAT size = 40315 bytes (15136 bytes decrease)
Output file size = 40393 bytes (15208 bytes = 27.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45002 bytes
Input file size = 45140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
Output IDAT size = 33628 bytes (11374 bytes decrease)
Output file size = 33706 bytes (11434 bytes = 25.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64994 bytes
Input file size = 65156 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
Output IDAT size = 47920 bytes (17074 bytes decrease)
Output file size = 47998 bytes (17158 bytes = 26.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30853 bytes
Input file size = 30967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
Output IDAT size = 23590 bytes (7263 bytes decrease)
Output file size = 23668 bytes (7299 bytes = 23.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42264 bytes
Input file size = 42402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
Output IDAT size = 31810 bytes (10454 bytes decrease)
Output file size = 31888 bytes (10514 bytes = 24.80% decrease)
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building ‘PPtreeregViz.Rmd’
SUMMARY: processing the following file failed:
‘PPtreeregViz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘PPtreeregViz.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16562 bytes
Input file size = 17444 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344
Output IDAT size = 15344 bytes (1218 bytes decrease)
Output file size = 15422 bytes (2022 bytes = 11.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47467 bytes
Input file size = 47605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218
Output IDAT size = 39218 bytes (8249 bytes decrease)
Output file size = 39296 bytes (8309 bytes = 17.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52857 bytes
Input file size = 53007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611
Output IDAT size = 44611 bytes (8246 bytes decrease)
Output file size = 44689 bytes (8318 bytes = 15.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52041 bytes
Input file size = 52191 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880
Output IDAT size = 43880 bytes (8161 bytes decrease)
Output file size = 43958 bytes (8233 bytes = 15.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20953 bytes
Input file size = 21055 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909
Output IDAT size = 14909 bytes (6044 bytes decrease)
Output file size = 14987 bytes (6068 bytes = 28.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11346 bytes
Input file size = 11436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725
Output IDAT size = 8725 bytes (2621 bytes decrease)
Output file size = 8803 bytes (2633 bytes = 23.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51223 bytes
Input file size = 51373 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196
Output IDAT size = 40196 bytes (11027 bytes decrease)
Output file size = 40274 bytes (11099 bytes = 21.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54985 bytes
Input file size = 55135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743
Output IDAT size = 39743 bytes (15242 bytes decrease)
Output file size = 39821 bytes (15314 bytes = 27.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55451 bytes
Input file size = 55601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315
Output IDAT size = 40315 bytes (15136 bytes decrease)
Output file size = 40393 bytes (15208 bytes = 27.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45002 bytes
Input file size = 45140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628
Output IDAT size = 33628 bytes (11374 bytes decrease)
Output file size = 33706 bytes (11434 bytes = 25.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64994 bytes
Input file size = 65156 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920
Output IDAT size = 47920 bytes (17074 bytes decrease)
Output file size = 47998 bytes (17158 bytes = 26.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30853 bytes
Input file size = 30967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590
Output IDAT size = 23590 bytes (7263 bytes decrease)
Output file size = 23668 bytes (7299 bytes = 23.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42264 bytes
Input file size = 42402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810
Output IDAT size = 31810 bytes (10454 bytes decrease)
Output file size = 31888 bytes (10514 bytes = 24.80% decrease)
Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd)
Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics:
'feature_matrix_cpp' is not an exported object from 'namespace:shapr'
--- failed re-building ‘PPtreeregViz.Rmd’
SUMMARY: processing the following file failed:
‘PPtreeregViz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64