Last updated on 2025-01-23 19:49:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.3.0 | 50.12 | 544.72 | 594.84 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 3.3.0 | 28.75 | 323.38 | 352.13 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.3.0 | 1043.20 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 3.3.0 | 935.78 | ERROR | |||
| r-devel-windows-x86_64 | 3.3.0 | 47.00 | 486.00 | 533.00 | ERROR | |
| r-patched-linux-x86_64 | 3.3.0 | 58.94 | 509.97 | 568.91 | OK | |
| r-release-linux-x86_64 | 3.3.0 | 49.26 | 510.78 | 560.04 | ERROR | |
| r-release-macos-arm64 | 3.3.0 | 125.00 | OK | |||
| r-release-macos-x86_64 | 3.3.0 | 262.00 | OK | |||
| r-release-windows-x86_64 | 3.3.0 | 46.00 | 487.00 | 533.00 | OK | |
| r-oldrel-macos-arm64 | 3.3.0 | 138.00 | OK | |||
| r-oldrel-macos-x86_64 | 3.3.0 | 278.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.3.0 | 66.00 | 676.00 | 742.00 | ERROR |
Version: 3.3.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
FixedDiscrDiscrIT.Rd: logistf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 3.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [130s/188s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(Surrogate)
>
> test_check("Surrogate")
Loading required namespace: cubature
Loading required namespace: FNN
Loading required namespace: parallel
[1] "Starting parallel simulations"
[1] "Finishing parallel simulations"
Loading required namespace: copula
Loading required namespace: fitdistrplus
Loading required namespace: stringr
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
'test-sensitivity_analysis_SurvSurv.R:44:3',
'test-sensitivity_intervals.R:94:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.99131 0.47209 0.65521 0.98636
`expected`: 0.99153 0.02533 0.52019 0.06634
── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.2638 -0.5661 0.3336 0.7359
`expected`: 0.2505 -0.5384 0.3952 0.7446
── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.3354 0.4093 0.8920 0.8380
`expected`: 0.3299 0.3859 0.8902 0.8350
── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.4237 0.2766 0.6657 0.5154
`expected`: 0.4410 0.3103 0.6764 0.5115
── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
`estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
actual vs expected
[,1]
- actual[1, ] 0.6785348
+ expected[1, ] 0.3093013
── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
`actual`: 0.3917 0.3080
`expected`: 0.4078 0.3116
── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
`actual`: 0.392 0.291
`expected`: 0.382 0.301
── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.991904525 0.995780207 1.374917943
`expected`: 0.988990899 0.993308293 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.975790156 0.970569834 1.374917943
`expected`: 0.979074242 0.971166765 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.970608529 0.964266929 1.374917943
`expected`: 0.973975832 0.972747027 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
`actual`: 0.997023687 0.995343606 0.436161761
`expected`: 0.996814267 0.995511262 0.436161761
── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.822232 0.996771 1.682037
`expected`: 0.822136 0.995515 1.682037
── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.835910421 | 0.835910421 [1]
[2] 0.997707840 | 0.997707840 [2]
[3] 0.771344327 - 0.748958557 [3]
[4] 0.996707340 - 0.997291086 [4]
[5] 0.777426823 - 0.754652671 [5]
[6] 0.996552084 - 0.997185131 [6]
── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.642646510 | 0.642646510 [1]
[2] 0.991589288 | 0.991589288 [2]
[3] 0.562796108 - 0.504365537 [3]
[4] 0.989819380 - 0.991103511 [4]
[5] 0.564156839 - 0.521834842 [5]
[6] 0.989592088 - 0.990989206 [6]
── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.751294689 | 0.751294689 [1]
[2] 0.820984966 | 0.820984966 [2]
[3] 0.727620865 - 0.711347431 [3]
[4] 0.820958783 - 0.820793874 [4]
[5] 0.728769400 - 0.712601776 [5]
[6] 0.820940724 - 0.820715995 [6]
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
Deleting unused snapshots:
• goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
• goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.3.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘optimx’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 3.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [7m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(Surrogate)
>
> test_check("Surrogate")
Loading required namespace: cubature
Loading required namespace: FNN
Loading required namespace: parallel
[1] "Starting parallel simulations"
[1] "Finishing parallel simulations"
Loading required namespace: copula
Loading required namespace: fitdistrplus
Loading required namespace: stringr
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
'test-sensitivity_analysis_SurvSurv.R:44:3',
'test-sensitivity_intervals.R:94:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.99131 0.47209 0.65521 0.98636
`expected`: 0.99153 0.02533 0.52019 0.06634
── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.2638 -0.5661 0.3336 0.7359
`expected`: 0.2505 -0.5384 0.3952 0.7446
── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.3354 0.4093 0.8920 0.8380
`expected`: 0.3299 0.3859 0.8902 0.8350
── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.4237 0.2766 0.6657 0.5154
`expected`: 0.4410 0.3103 0.6764 0.5115
── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
`estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
actual vs expected
[,1]
- actual[1, ] 0.6785348
+ expected[1, ] 0.3093013
── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
`actual`: 0.3917 0.3080
`expected`: 0.4078 0.3116
── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
`actual`: 0.392 0.291
`expected`: 0.382 0.301
── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.991904525 0.995780207 1.374917943
`expected`: 0.988990899 0.993308293 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.975790156 0.970569834 1.374917943
`expected`: 0.979074242 0.971166765 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.970608529 0.964266929 1.374917943
`expected`: 0.973975832 0.972747027 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
`actual`: 0.997023687 0.995343606 0.436161761
`expected`: 0.996814267 0.995511262 0.436161761
── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.822232 0.996771 1.682037
`expected`: 0.822136 0.995515 1.682037
── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.835910421 | 0.835910421 [1]
[2] 0.997707840 | 0.997707840 [2]
[3] 0.771344327 - 0.748958557 [3]
[4] 0.996707340 - 0.997291086 [4]
[5] 0.777426823 - 0.754652671 [5]
[6] 0.996552084 - 0.997185131 [6]
── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.642646510 | 0.642646510 [1]
[2] 0.991589288 | 0.991589288 [2]
[3] 0.562796108 - 0.504365537 [3]
[4] 0.989819380 - 0.991103511 [4]
[5] 0.564156839 - 0.521834842 [5]
[6] 0.989592088 - 0.990989206 [6]
── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.751294689 | 0.751294689 [1]
[2] 0.820984966 | 0.820984966 [2]
[3] 0.727620865 - 0.711347431 [3]
[4] 0.820958783 - 0.820793874 [4]
[5] 0.728769400 - 0.712601776 [5]
[6] 0.820940724 - 0.820715995 [6]
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
Deleting unused snapshots:
• goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
• goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [373s/393s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(Surrogate)
>
> test_check("Surrogate")
Loading required namespace: cubature
Loading required namespace: FNN
Loading required namespace: parallel
[1] "Starting parallel simulations"
[1] "Finishing parallel simulations"
Loading required namespace: copula
Loading required namespace: fitdistrplus
Loading required namespace: stringr
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
'test-sensitivity_analysis_SurvSurv.R:44:3',
'test-sensitivity_intervals.R:94:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.99131 0.47209 0.65521 0.98636
`expected`: 0.99153 0.02533 0.52019 0.06634
── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.2638 -0.5661 0.3336 0.7359
`expected`: 0.2505 -0.5384 0.3952 0.7446
── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.3354 0.4093 0.8920 0.8380
`expected`: 0.3299 0.3859 0.8902 0.8350
── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.4237 0.2766 0.6657 0.5154
`expected`: 0.4410 0.3103 0.6764 0.5115
── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
`estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
actual vs expected
[,1]
- actual[1, ] 0.6785348
+ expected[1, ] 0.3093013
── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
`actual`: 0.3917 0.3080
`expected`: 0.4078 0.3116
── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
`actual`: 0.392 0.291
`expected`: 0.382 0.301
── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.991904525 0.995780207 1.374917943
`expected`: 0.988990899 0.993308293 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.975790156 0.970569834 1.374917943
`expected`: 0.979074242 0.971166765 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.970608529 0.964266929 1.374917943
`expected`: 0.973975832 0.972747027 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
`actual`: 0.997023687 0.995343606 0.436161761
`expected`: 0.996814267 0.995511262 0.436161761
── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.822232 0.996771 1.682037
`expected`: 0.822136 0.995515 1.682037
── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.835910421 | 0.835910421 [1]
[2] 0.997707840 | 0.997707840 [2]
[3] 0.771344327 - 0.748958557 [3]
[4] 0.996707340 - 0.997291086 [4]
[5] 0.777426823 - 0.754652671 [5]
[6] 0.996552084 - 0.997185131 [6]
── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.642646510 | 0.642646510 [1]
[2] 0.991589288 | 0.991589288 [2]
[3] 0.562796108 - 0.504365537 [3]
[4] 0.989819380 - 0.991103511 [4]
[5] 0.564156839 - 0.521834842 [5]
[6] 0.989592088 - 0.990989206 [6]
── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.751294689 | 0.751294689 [1]
[2] 0.820984966 | 0.820984966 [2]
[3] 0.727620865 - 0.711347431 [3]
[4] 0.820958783 - 0.820793874 [4]
[5] 0.728769400 - 0.712601776 [5]
[6] 0.820940724 - 0.820715995 [6]
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
Deleting unused snapshots:
• goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
• goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [184s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(Surrogate)
>
> test_check("Surrogate")
Loading required namespace: cubature
Loading required namespace: FNN
Loading required namespace: parallel
[1] "Starting parallel simulations"
[1] "Finishing parallel simulations"
Loading required namespace: copula
Loading required namespace: fitdistrplus
Loading required namespace: stringr
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
'test-sensitivity_analysis_SurvSurv.R:44:3',
'test-sensitivity_intervals.R:94:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.99131 0.47209 0.65521 0.98636
`expected`: 0.99153 0.02533 0.52019 0.06634
── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.2638 -0.5661 0.3336 0.7359
`expected`: 0.2505 -0.5384 0.3952 0.7446
── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.3354 0.4093 0.8920 0.8380
`expected`: 0.3299 0.3859 0.8902 0.8350
── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.4237 0.2766 0.6657 0.5154
`expected`: 0.4410 0.3103 0.6764 0.5115
── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
`estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
actual vs expected
[,1]
- actual[1, ] 0.6785348
+ expected[1, ] 0.3093013
── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
`actual`: 0.3917 0.3080
`expected`: 0.4078 0.3116
── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
`actual`: 0.392 0.291
`expected`: 0.382 0.301
── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.991904525 0.995780207 1.374917943
`expected`: 0.988990899 0.993308293 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.975790156 0.970569834 1.374917943
`expected`: 0.979074242 0.971166765 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.970608529 0.964266929 1.374917943
`expected`: 0.973975832 0.972747027 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
`actual`: 0.997023687 0.995343606 0.436161761
`expected`: 0.996814267 0.995511262 0.436161761
── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.822232 0.996771 1.682037
`expected`: 0.822136 0.995515 1.682037
── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.835910421 | 0.835910421 [1]
[2] 0.997707840 | 0.997707840 [2]
[3] 0.771344327 - 0.748958557 [3]
[4] 0.996707340 - 0.997291086 [4]
[5] 0.777426823 - 0.754652671 [5]
[6] 0.996552084 - 0.997185131 [6]
── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.642646510 | 0.642646510 [1]
[2] 0.991589288 | 0.991589288 [2]
[3] 0.562796108 - 0.504365537 [3]
[4] 0.989819380 - 0.991103511 [4]
[5] 0.564156839 - 0.521834842 [5]
[6] 0.989592088 - 0.990989206 [6]
── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.751294689 | 0.751294689 [1]
[2] 0.820984966 | 0.820984966 [2]
[3] 0.727620865 - 0.711347431 [3]
[4] 0.820958783 - 0.820793874 [4]
[5] 0.728769400 - 0.712601776 [5]
[6] 0.820940724 - 0.820715995 [6]
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
Deleting unused snapshots:
• goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
• goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 3.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [221s/295s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(Surrogate)
>
> test_check("Surrogate")
Loading required namespace: cubature
Loading required namespace: FNN
Loading required namespace: parallel
[1] "Starting parallel simulations"
[1] "Finishing parallel simulations"
Loading required namespace: copula
Loading required namespace: fitdistrplus
Loading required namespace: stringr
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
'test-sensitivity_analysis_SurvSurv.R:44:3',
'test-sensitivity_intervals.R:94:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.99131 0.47209 0.65521 0.98636
`expected`: 0.99153 0.02533 0.52019 0.06634
── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.2638 -0.5661 0.3336 0.7359
`expected`: 0.2505 -0.5384 0.3952 0.7446
── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.3354 0.4093 0.8920 0.8380
`expected`: 0.3299 0.3859 0.8902 0.8350
── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.4237 0.2766 0.6657 0.5154
`expected`: 0.4410 0.3103 0.6764 0.5115
── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
`estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
actual vs expected
[,1]
- actual[1, ] 0.6785348
+ expected[1, ] 0.3093013
── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
`actual`: 0.3917 0.3080
`expected`: 0.4078 0.3116
── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
`actual`: 0.392 0.291
`expected`: 0.382 0.301
── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.991904525 0.995780207 1.374917943
`expected`: 0.988990899 0.993308293 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.975790156 0.970569834 1.374917943
`expected`: 0.979074242 0.971166765 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.970608529 0.964266929 1.374917943
`expected`: 0.973975832 0.972747027 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
`actual`: 0.997023687 0.995343606 0.436161761
`expected`: 0.996814267 0.995511262 0.436161761
── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.822232 0.996771 1.682037
`expected`: 0.822136 0.995515 1.682037
── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.835910421 | 0.835910421 [1]
[2] 0.997707840 | 0.997707840 [2]
[3] 0.771344327 - 0.748958557 [3]
[4] 0.996707340 - 0.997291086 [4]
[5] 0.777426823 - 0.754652671 [5]
[6] 0.996552084 - 0.997185131 [6]
── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.642646510 | 0.642646510 [1]
[2] 0.991589288 | 0.991589288 [2]
[3] 0.562796108 - 0.504365537 [3]
[4] 0.989819380 - 0.991103511 [4]
[5] 0.564156839 - 0.521834842 [5]
[6] 0.989592088 - 0.990989206 [6]
── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.751294689 | 0.751294689 [1]
[2] 0.820984966 | 0.820984966 [2]
[3] 0.727620865 - 0.711347431 [3]
[4] 0.820958783 - 0.820793874 [4]
[5] 0.728769400 - 0.712601776 [5]
[6] 0.820940724 - 0.820715995 [6]
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
Deleting unused snapshots:
• goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
• goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 3.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [277s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(Surrogate)
>
> test_check("Surrogate")
Loading required namespace: cubature
Loading required namespace: FNN
Loading required namespace: parallel
[1] "Starting parallel simulations"
[1] "Finishing parallel simulations"
Loading required namespace: copula
Loading required namespace: fitdistrplus
Loading required namespace: stringr
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
'test-sensitivity_analysis_SurvSurv.R:44:3',
'test-sensitivity_intervals.R:94:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.99131 0.47209 0.65521 0.98636
`expected`: 0.99153 0.02533 0.52019 0.06634
── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 1.76 0.35 1.00 0.00
`expected`: 1.20 1.00 0.00 0.00
── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
`output_values` (`actual`) not equal to `expected_values` (`expected`).
`actual`: 0.2639 -0.5661 0.3336 0.7359
`expected`: 0.2505 -0.5384 0.3952 0.7446
── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.3354 0.4093 0.8920 0.8380
`expected`: 0.3299 0.3859 0.8902 0.8350
── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.4237 0.2766 0.6657 0.5154
`expected`: 0.4410 0.3103 0.6764 0.5115
── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
`estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
actual vs expected
[,1]
- actual[1, ] 0.6785348
+ expected[1, ] 0.3093013
── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
`actual`: 0.991708 0.001429
`expected`: 0.990967 0.001452
── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
`actual`: 0.3919 0.3082
`expected`: 0.4078 0.3116
── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
`actual`: 0.392 0.291
`expected`: 0.382 0.301
── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.991904525 0.995780207 1.374917943
`expected`: 0.988990899 0.993308293 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.975790156 0.970569834 1.374917943
`expected`: 0.979074242 0.971166765 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.970608529 0.964266929 1.374917943
`expected`: 0.973975832 0.972747027 1.374917943
── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
`actual`: 0.997023687 0.995343606 0.436161761
`expected`: 0.996814267 0.995511262 0.436161761
── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
`output_vector` (`actual`) not equal to `check_vector` (`expected`).
`actual`: 0.822232 0.996771 1.682037
`expected`: 0.822136 0.995515 1.682037
── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.835910421 | 0.835910421 [1]
[2] 0.997707840 | 0.997707840 [2]
[3] 0.771344327 - 0.748958557 [3]
[4] 0.996707340 - 0.997291086 [4]
[5] 0.777426823 - 0.754652671 [5]
[6] 0.996552084 - 0.997185131 [6]
── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.642646510 | 0.642646510 [1]
[2] 0.991589288 | 0.991589288 [2]
[3] 0.562796108 - 0.504365537 [3]
[4] 0.989819380 - 0.991103511 [4]
[5] 0.564156839 - 0.521834842 [5]
[6] 0.989592088 - 0.990989206 [6]
── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
c(...) (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] 0.751294689 | 0.751294689 [1]
[2] 0.820984966 | 0.820984966 [2]
[3] 0.727620865 - 0.711347431 [3]
[4] 0.820958783 - 0.820793874 [4]
[5] 0.728769400 - 0.712601776 [5]
[6] 0.820940724 - 0.820715995 [6]
[ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
Deleting unused snapshots:
• goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
• goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64