Last updated on 2024-05-29 08:56:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 30.20 | 51.46 | 81.66 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 18.71 | 40.09 | 58.80 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 119.65 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 114.14 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.0 | 20.00 | 82.00 | 102.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.0 | 22.77 | 56.11 | 78.88 | NOTE | |
| r-release-linux-x86_64 | 1.0.0 | 23.20 | 56.27 | 79.47 | NOTE | |
| r-release-macos-arm64 | 1.0.0 | 32.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.0 | 20.00 | 79.00 | 99.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.0 | 36.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 62.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 20.00 | 94.00 | 114.00 | NOTE |
Version: 1.0.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘maxnodf-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maxnodf
> ### Title: Calculate the maximum nestedness of a bipartite network
> ### Aliases: maxnodf
>
> ### ** Examples
>
> maxnodf(matrix(1.0, 12, 10))
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$max_nodf
[1] 0
$max_nodf_mtx
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
[1,] 1 1 1 1 1 1 1 1 1 1
[2,] 1 1 1 1 1 1 1 1 1 1
[3,] 1 1 1 1 1 1 1 1 1 1
[4,] 1 1 1 1 1 1 1 1 1 1
[5,] 1 1 1 1 1 1 1 1 1 1
[6,] 1 1 1 1 1 1 1 1 1 1
[7,] 1 1 1 1 1 1 1 1 1 1
[8,] 1 1 1 1 1 1 1 1 1 1
[9,] 1 1 1 1 1 1 1 1 1 1
[10,] 1 1 1 1 1 1 1 1 1 1
[11,] 1 1 1 1 1 1 1 1 1 1
[12,] 1 1 1 1 1 1 1 1 1 1
> maxnodf(c(14, 13, 52), 2)
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[> ] 0 %
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: sim_anneal_opt_cpp(mtx)
2: maxnodf(c(14, 13, 52), 2)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(maxnodf)
>
> test_check("maxnodf")
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Hillclimb round: 1. Current NODF= 0.9
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[> ] 0 %
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: sim_anneal_opt_cpp(mtx)
2: maxnodf(m, quality = 2)
3: eval_bare(expr, quo_get_env(quo))
4: quasi_label(enquo(object), label, arg = "object")
5: expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9)
6: eval(code, test_env)
7: eval(code, test_env)
8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
17: test_that("maxnodf", { m <- matrix(0, 5, 5) diag(m) <- 1 m[1:2, ] <- 1 expect_equal(maxnodf(m, quality = 0)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 1)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) expect_equal(maxnodf(c(5, 5, 13), quality = 0)$max_nodf, 0.9)})
18: eval(code, test_env)
19: eval(code, test_env)
20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
21: doTryCatch(return(expr), name, parentenv, handler)
22: tryCatchOne(expr, names, parentenv, handlers[[1L]])
23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
24: doTryCatch(return(expr), name, parentenv, handler)
25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
26: tryCatchList(expr, classes, parentenv, handlers)
27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
29: source_file(path, env = env(env), desc = desc, error_call = error_call)
30: FUN(X[[i]], ...)
31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
32: doTryCatch(return(expr), name, parentenv, handler)
33: tryCatchOne(expr, names, parentenv, handlers[[1L]])
34: tryCatchList(expr, classes, parentenv, handlers)
35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
40: test_check("maxnodf")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(maxnodf)
>
> test_check("maxnodf")
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Hillclimb round: 1. Current NODF= 0.9
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[> ] 0 %
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: sim_anneal_opt_cpp(mtx)
2: maxnodf(m, quality = 2)
3: eval_bare(expr, quo_get_env(quo))
4: quasi_label(enquo(object), label, arg = "object")
5: expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9)
6: eval(code, test_env)
7: eval(code, test_env)
8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
17: test_that("maxnodf", { m <- matrix(0, 5, 5) diag(m) <- 1 m[1:2, ] <- 1 expect_equal(maxnodf(m, quality = 0)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 1)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) expect_equal(maxnodf(c(5, 5, 13), quality = 0)$max_nodf, 0.9)})
18: eval(code, test_env)
19: eval(code, test_env)
20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
21: doTryCatch(return(expr), name, parentenv, handler)
22: tryCatchOne(expr, names, parentenv, handlers[[1L]])
23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
24: doTryCatch(return(expr), name, parentenv, handler)
25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
26: tryCatchList(expr, classes, parentenv, handlers)
27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
29: source_file(path, env = env(env), desc = desc, error_call = error_call)
30: FUN(X[[i]], ...)
31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
32: doTryCatch(return(expr), name, parentenv, handler)
33: tryCatchOne(expr, names, parentenv, handlers[[1L]])
34: tryCatchList(expr, classes, parentenv, handlers)
35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
40: test_check("maxnodf")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘stats’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc