Last updated on 2024-11-05 08:48:40 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.4 | 277.62 | 437.84 | 715.46 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.4 | 190.94 | 302.49 | 493.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.4 | 1187.71 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.4 | 1200.99 | ERROR | |||
| r-devel-windows-x86_64 | 1.3.4 | 265.00 | 439.00 | 704.00 | OK | |
| r-patched-linux-x86_64 | 1.3.4 | 274.13 | 415.07 | 689.20 | OK | |
| r-release-linux-x86_64 | 1.3.4 | 275.27 | 409.15 | 684.42 | OK | |
| r-release-macos-arm64 | 1.3.4 | 327.00 | NOTE | |||
| r-release-macos-x86_64 | 1.3.4 | 444.00 | NOTE | |||
| r-release-windows-x86_64 | 1.3.4 | 275.00 | 461.00 | 736.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.3.4 | 302.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.3.4 | 609.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.3.4 | 317.00 | 573.00 | 890.00 | NOTE |
Version: 1.3.4
Check: examples
Result: ERROR
Running examples in ‘mets-Ex.R’ failed
The error most likely occurred in:
> ### Name: dprint
> ### Title: list, head, print, tail
> ### Aliases: dprint dlist dhead dtail
>
> ### ** Examples
>
> m <- lava::lvm(letters)
Error in cbind(idxM, pidxM) : cannot get data pointer of 'NULL' objects
Calls: <Anonymous> ... addvar -> addvar.lvm -> reindex -> mat.lvm -> cbind
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘basic-dutils.Rmd’ using rmarkdown
--- finished re-building ‘basic-dutils.Rmd’
--- re-building ‘binomial-family.Rmd’ using rmarkdown
--- finished re-building ‘binomial-family.Rmd’
--- re-building ‘binomial-twin.Rmd’ using rmarkdown
--- finished re-building ‘binomial-twin.Rmd’
--- re-building ‘binreg-TRS.rmd’ using rmarkdown
--- finished re-building ‘binreg-TRS.rmd’
--- re-building ‘binreg-ate.Rmd’ using rmarkdown
--- finished re-building ‘binreg-ate.Rmd’
--- re-building ‘binreg.Rmd’ using rmarkdown
--- finished re-building ‘binreg.Rmd’
--- re-building ‘cifreg.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29464 bytes
Input file size = 29578 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24398
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24398
Output IDAT size = 24398 bytes (5066 bytes decrease)
Output file size = 24476 bytes (5102 bytes = 17.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-4-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17177 bytes
Input file size = 17279 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13514
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13514
Output IDAT size = 13514 bytes (3663 bytes decrease)
Output file size = 13592 bytes (3687 bytes = 21.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-5-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17762 bytes
Input file size = 17864 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14313
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14313
Output IDAT size = 14313 bytes (3449 bytes decrease)
Output file size = 14391 bytes (3473 bytes = 19.44% decrease)
--- finished re-building ‘cifreg.Rmd’
--- re-building ‘glm-utility.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/glm-utility_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26142 bytes
Input file size = 26256 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21135
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21135
Output IDAT size = 21135 bytes (5007 bytes decrease)
Output file size = 21213 bytes (5043 bytes = 19.21% decrease)
--- finished re-building ‘glm-utility.Rmd’
--- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown
--- finished re-building ‘haplo-discrete-ttp.Rmd’
--- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/interval-discrete-survival_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 8 bits/pixel, 253 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5459 bytes
Input file size = 6308 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4417
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4417
Output IDAT size = 4417 bytes (1042 bytes decrease)
Output file size = 4495 bytes (1813 bytes = 28.74% decrease)
--- finished re-building ‘interval-discrete-survival.Rmd’
--- re-building ‘marginal-cox.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-5-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9463 bytes
Input file size = 9553 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088
Output IDAT size = 7088 bytes (2375 bytes decrease)
Output file size = 7166 bytes (2387 bytes = 24.99% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-6-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11738 bytes
Input file size = 11828 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8571
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8571
Output IDAT size = 8571 bytes (3167 bytes decrease)
Output file size = 8649 bytes (3179 bytes = 26.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60671 bytes
Input file size = 60833 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53840
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53840
Output IDAT size = 53840 bytes (6831 bytes decrease)
Output file size = 53918 bytes (6915 bytes = 11.37% decrease)
--- finished re-building ‘marginal-cox.Rmd’
--- re-building ‘mediation-survival.Rmd’ using rmarkdown
--- finished re-building ‘mediation-survival.Rmd’
--- re-building ‘quantitative-twin.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/scatter1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44960 bytes
Input file size = 45098 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36549
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36549
Output IDAT size = 36549 bytes (8411 bytes decrease)
Output file size = 36627 bytes (8471 bytes = 18.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/scatter2-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52082 bytes
Input file size = 52232 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40802
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40802
Output IDAT size = 40802 bytes (11280 bytes decrease)
Output file size = 40880 bytes (11352 bytes = 21.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/marg1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10242 bytes
Input file size = 10332 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7520
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7520
Output IDAT size = 7520 bytes (2722 bytes decrease)
Output file size = 7598 bytes (2734 bytes = 26.46% decrease)
Quitting from lines 244-246 [lmeqmarg] (quantitative-twin.Rmd)
Error: processing vignette 'quantitative-twin.Rmd' failed with diagnostics:
cannot get data pointer of 'NULL' objects
--- failed re-building ‘quantitative-twin.Rmd’
--- re-building ‘recurrent-events.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-4-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14723 bytes
Input file size = 14813 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11911
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11911
Output IDAT size = 11911 bytes (2812 bytes decrease)
Output file size = 11989 bytes (2824 bytes = 19.06% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-6-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18946 bytes
Input file size = 19048 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15389
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15389
Output IDAT size = 15389 bytes (3557 bytes decrease)
Output file size = 15467 bytes (3581 bytes = 18.80% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-7-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15434 bytes
Input file size = 15524 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12690
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12690
Output IDAT size = 12690 bytes (2744 bytes decrease)
Output file size = 12768 bytes (2756 bytes = 17.75% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-8-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9176 bytes
Input file size = 9266 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7268
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7268
Output IDAT size = 7268 bytes (1908 bytes decrease)
Output file size = 7346 bytes (1920 bytes = 20.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-10-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11918 bytes
Input file size = 12008 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9348
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9348
Output IDAT size = 9348 bytes (2570 bytes decrease)
Output file size = 9426 bytes (2582 bytes = 21.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-13-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11843 bytes
Input file size = 11933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9192
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9192
Output IDAT size = 9192 bytes (2651 bytes decrease)
Output file size = 9270 bytes (2663 bytes = 22.32% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-18-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11266 bytes
Input file size = 11356 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9090
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9090
Output IDAT size = 9090 bytes (2176 bytes decrease)
Output file size = 9168 bytes (2188 bytes = 19.27% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-19-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14034 bytes
Input file size = 14124 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9564
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9564
Output IDAT size = 9564 bytes (4470 bytes decrease)
Output file size = 9642 bytes (4482 bytes = 31.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-20-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8398 bytes
Input file size = 8488 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6705
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6705
Output IDAT size = 6705 bytes (1693 bytes decrease)
Output file size = 6783 bytes (1705 bytes = 20.09% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-21-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26681 bytes
Input file size = 26795 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18920
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18920
Output IDAT size = 18920 bytes (7761 bytes decrease)
Output file size = 18998 bytes (7797 bytes = 29.10% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-22-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19224 bytes
Input file size = 19326 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15449
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15449
Output IDAT size = 15449 bytes (3775 bytes decrease)
Output file size = 15527 bytes (3799 bytes = 19.66% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-24-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12167 bytes
Input file size = 12257 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9086
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9086
Output IDAT size = 9086 bytes (3081 bytes decrease)
Output file size = 9164 bytes (3093 bytes = 25.23% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-25-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19643 bytes
Input file size = 19745 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16222
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16222
Output IDAT size = 16222 bytes (3421 bytes decrease)
Output file size = 16300 bytes (3445 bytes = 17.45% decrease)
--- finished re-building ‘recurrent-events.Rmd’
--- re-building ‘rmst-ate.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/rmst-ate_files/figure-html/unnamed-chunk-2-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54326 bytes
Input file size = 54476 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46859
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46859
Output IDAT size = 46859 bytes (7467 bytes decrease)
Output file size = 46937 bytes (7539 bytes = 13.84% decrease)
--- finished re-building ‘rmst-ate.Rmd’
--- re-building ‘survival-ate.Rmd’ using rmarkdown
--- finished re-building ‘survival-ate.Rmd’
--- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/survival-marginal-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13904 bytes
Input file size = 13994 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10347
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10347
Output IDAT size = 10347 bytes (3557 bytes decrease)
Output file size = 10425 bytes (3569 bytes = 25.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14734 bytes
Input file size = 14824 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11206
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11206
Output IDAT size = 11206 bytes (3528 bytes decrease)
Output file size = 11284 bytes (3540 bytes = 23.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 8 bits/pixel, 251 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5486 bytes
Input file size = 6329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4901
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4901
Output IDAT size = 4901 bytes (585 bytes decrease)
Output file size = 4979 bytes (1350 bytes = 21.33% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance2-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16105 bytes
Input file size = 16195 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12219
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12219
Output IDAT size = 12219 bytes (3886 bytes decrease)
Output file size = 12297 bytes (3898 bytes = 24.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance3-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17119 bytes
Input file size = 17221 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13192
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13192
Output IDAT size = 13192 bytes (3927 bytes decrease)
Output file size = 13270 bytes (3951 bytes = 22.94% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-17-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8824 bytes
Input file size = 8914 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6843
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6843
Output IDAT size = 6843 bytes (1981 bytes decrease)
Output file size = 6921 bytes (1993 bytes = 22.36% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/biprobittime1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12320 bytes
Input file size = 12410 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9605
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9605
Output IDAT size = 9605 bytes (2715 bytes decrease)
Output file size = 9683 bytes (2727 bytes = 21.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8465 bytes
Input file size = 8555 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6375
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6375
Output IDAT size = 6375 bytes (2090 bytes decrease)
Output file size = 6453 bytes (2102 bytes = 24.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-2.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8803 bytes
Input file size = 8893 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6785
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6785
Output IDAT size = 6785 bytes (2018 bytes decrease)
Output file size = 6863 bytes (2030 bytes = 22.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-3.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8617 bytes
Input file size = 8707 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6387
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6387
Output IDAT size = 6387 bytes (2230 bytes decrease)
Output file size = 6465 bytes (2242 bytes = 25.75% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-4.png
357x275 pixels, 8 bits/pixel, 213 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2376 bytes
Input file size = 3105 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1985
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1985
Output IDAT size = 1985 bytes (391 bytes decrease)
Output file size = 2063 bytes (1042 bytes = 33.56% decrease)
--- finished re-building ‘time-to-event-family-studies-arev.Rmd’
--- re-building ‘twostage-survival.Rmd’ using rmarkdown
--- finished re-building ‘twostage-survival.Rmd’
SUMMARY: processing the following file failed:
‘quantitative-twin.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.4
Check: installed package size
Result: NOTE
installed size is 27.3Mb
sub-directories of 1Mb or more:
R 2.0Mb
doc 2.8Mb
libs 20.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64