Last updated on 2024-11-27 19:49:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 5.0.0 | 8.53 | 162.67 | 171.20 | OK | |
| r-devel-linux-x86_64-debian-gcc | 5.0.0 | 5.33 | 114.57 | 119.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 5.0.0 | 280.63 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 5.0.0 | 331.79 | ERROR | |||
| r-devel-windows-x86_64 | 5.0.0 | 9.00 | 202.00 | 211.00 | OK | |
| r-patched-linux-x86_64 | 5.0.0 | 8.51 | 157.62 | 166.13 | OK | |
| r-release-linux-x86_64 | 5.0.0 | 6.35 | 155.47 | 161.82 | OK | |
| r-release-macos-arm64 | 5.0.0 | 87.00 | OK | |||
| r-release-macos-x86_64 | 5.0.0 | 132.00 | OK | |||
| r-release-windows-x86_64 | 5.0.0 | 10.00 | 196.00 | 206.00 | OK | |
| r-oldrel-macos-arm64 | 5.0.0 | 99.00 | OK | |||
| r-oldrel-macos-x86_64 | 5.0.0 | 153.00 | OK | |||
| r-oldrel-windows-x86_64 | 5.0.0 | 13.00 | 233.00 | 246.00 | OK |
Version: 5.0.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘DescTools’ ‘MASS’ ‘gridExtra’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 5.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘coupled_oscillator_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8646 bytes
Input file size = 8736 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088
Output IDAT size = 7088 bytes (1558 bytes decrease)
Output file size = 7166 bytes (1570 bytes = 17.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-2.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18554 bytes
Input file size = 18656 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15820
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15820
Output IDAT size = 15820 bytes (2734 bytes decrease)
Output file size = 15898 bytes (2758 bytes = 14.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-3.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10117 bytes
Input file size = 10987 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9009
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9009
Output IDAT size = 9009 bytes (1108 bytes decrease)
Output file size = 9087 bytes (1900 bytes = 17.29% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-4.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10489 bytes
Input file size = 11359 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9451
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9451
Output IDAT size = 9451 bytes (1038 bytes decrease)
Output file size = 9529 bytes (1830 bytes = 16.11% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-11-1.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11217 bytes
Input file size = 12087 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10091
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10091
Output IDAT size = 10091 bytes (1126 bytes decrease)
Output file size = 10169 bytes (1918 bytes = 15.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-11-2.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11958 bytes
Input file size = 12828 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10957
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10957
Output IDAT size = 10957 bytes (1001 bytes decrease)
Output file size = 11035 bytes (1793 bytes = 13.98% decrease)
--- finished re-building ‘coupled_oscillator_V05.Rmd’
--- re-building ‘inertia_coordination_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24265 bytes
Input file size = 24367 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18529
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18529
Output IDAT size = 18529 bytes (5736 bytes decrease)
Output file size = 18607 bytes (5760 bytes = 23.64% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23647 bytes
Input file size = 23749 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18137
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18137
Output IDAT size = 18137 bytes (5510 bytes decrease)
Output file size = 18215 bytes (5534 bytes = 23.30% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-3.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26948 bytes
Input file size = 27062 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20212
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20212
Output IDAT size = 20212 bytes (6736 bytes decrease)
Output file size = 20290 bytes (6772 bytes = 25.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-4.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26533 bytes
Input file size = 26647 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20054
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20054
Output IDAT size = 20054 bytes (6479 bytes decrease)
Output file size = 20132 bytes (6515 bytes = 24.45% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-1.png
432x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20357 bytes
Input file size = 20459 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14729
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14729
Output IDAT size = 14729 bytes (5628 bytes decrease)
Output file size = 14807 bytes (5652 bytes = 27.63% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-2.png
432x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16489 bytes
Input file size = 16591 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13379
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13379
Output IDAT size = 13379 bytes (3110 bytes decrease)
Output file size = 13457 bytes (3134 bytes = 18.89% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-3.png
432x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7946 bytes
Input file size = 8804 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7298
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7298
Output IDAT size = 7298 bytes (648 bytes decrease)
Output file size = 7376 bytes (1428 bytes = 16.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-4.png
432x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21978 bytes
Input file size = 22860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18256
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17641
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17641
Output IDAT size = 17641 bytes (4337 bytes decrease)
Output file size = 17719 bytes (5141 bytes = 22.49% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-5.png
432x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14722 bytes
Input file size = 15592 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13930
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13886
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13364
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12980
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12980
Output IDAT size = 12980 bytes (1742 bytes decrease)
Output file size = 13058 bytes (2534 bytes = 16.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-9-1.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7535 bytes
Input file size = 8393 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6900
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6900
Output IDAT size = 6900 bytes (635 bytes decrease)
Output file size = 6978 bytes (1415 bytes = 16.86% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-9-2.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16055 bytes
Input file size = 16925 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15070
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13721
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13498
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13498
Output IDAT size = 13498 bytes (2557 bytes decrease)
Output file size = 13576 bytes (3349 bytes = 19.79% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-9-3.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13430 bytes
Input file size = 14300 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12609
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12389
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12149
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12149
Output IDAT size = 12149 bytes (1281 bytes decrease)
Output file size = 12227 bytes (2073 bytes = 14.50% decrease)
--- finished re-building ‘inertia_coordination_V05.Rmd’
--- re-building ‘overview_data_prep_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/overview_data_prep_V05_files/figure-html/unnamed-chunk-8-1.png
480x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9599 bytes
Input file size = 10469 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8625
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8625
Output IDAT size = 8625 bytes (974 bytes decrease)
Output file size = 8703 bytes (1766 bytes = 16.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/overview_data_prep_V05_files/figure-html/unnamed-chunk-9-1.png
540x540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44293 bytes
Input file size = 44431 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
Output IDAT size = 40630 bytes (3663 bytes decrease)
Output file size = 40708 bytes (3723 bytes = 8.38% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/overview_data_prep_V05_files/figure-html/unnamed-chunk-9-2.png
540x540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44293 bytes
Input file size = 44431 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
Output IDAT size = 40630 bytes (3663 bytes decrease)
Output file size = 40708 bytes (3723 bytes = 8.38% decrease)
--- finished re-building ‘overview_data_prep_V05.Rmd’
--- re-building ‘sysVar_inOut_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7117 bytes
Input file size = 7195 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5671
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5671
Output IDAT size = 5671 bytes (1446 bytes decrease)
Output file size = 5749 bytes (1446 bytes = 20.10% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13023 bytes
Input file size = 13113 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10753
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10753
Output IDAT size = 10753 bytes (2270 bytes decrease)
Output file size = 10831 bytes (2282 bytes = 17.40% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-3.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8277 bytes
Input file size = 9147 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7808
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7808
Output IDAT size = 7808 bytes (469 bytes decrease)
Output file size = 7886 bytes (1261 bytes = 13.79% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-4.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8244 bytes
Input file size = 9114 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7771
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7771
Output IDAT size = 7771 bytes (473 bytes decrease)
Output file size = 7849 bytes (1265 bytes = 13.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-5.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8207 bytes
Input file size = 9077 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7730
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7730
Output IDAT size = 7730 bytes (477 bytes decrease)
Output file size = 7808 bytes (1269 bytes = 13.98% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-6.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14876 bytes
Input file size = 15746 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14351
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14315
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12133
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11721
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11721
Output IDAT size = 11721 bytes (3155 bytes decrease)
Output file size = 11799 bytes (3947 bytes = 25.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-7.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15642 bytes
Input file size = 16512 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 15073
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12580
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12171
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12171
Output IDAT size = 12171 bytes (3471 bytes decrease)
Output file size = 12249 bytes (4263 bytes = 25.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-8.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15933 bytes
Input file size = 16803 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15462
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 15414
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12876
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12370
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12370
Output IDAT size = 12370 bytes (3563 bytes decrease)
Output file size = 12448 bytes (4355 bytes = 25.92% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-3-1.png
480x288 pixels, 8 bits/pixel, 249 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4133 bytes
Input file size = 4970 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3637
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3637
Output IDAT size = 3637 bytes (496 bytes decrease)
Output file size = 3715 bytes (1255 bytes = 25.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-3-2.png
480x288 pixels, 8 bits/pixel, 239 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2940 bytes
Input file size = 3747 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2385
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2373
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2373
Output IDAT size = 2373 bytes (567 bytes decrease)
Output file size = 2451 bytes (1296 bytes = 34.59% decrease)
Quitting from lines 63-64 [unnamed-chunk-5] (sysVar_inOut_V05.Rmd)
Error: processing vignette 'sysVar_inOut_V05.Rmd' failed with diagnostics:
Invalid option for argument `type`. Did you mean one of "fixed",
"zero_inflated", "zero_inflated_random", "simulate" or
"cumulative_hazard"? We even found 3 more possible matches, not shown
here. Otherwise, use one of the following options: "count", "random",
"zi_random", "zi_prob", "survival", "simulate_random", "debug" or
"quantile"
--- failed re-building ‘sysVar_inOut_V05.Rmd’
SUMMARY: processing the following file failed:
‘sysVar_inOut_V05.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 5.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘coupled_oscillator_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8646 bytes
Input file size = 8736 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088
Output IDAT size = 7088 bytes (1558 bytes decrease)
Output file size = 7166 bytes (1570 bytes = 17.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-2.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18554 bytes
Input file size = 18656 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15820
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15820
Output IDAT size = 15820 bytes (2734 bytes decrease)
Output file size = 15898 bytes (2758 bytes = 14.78% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-3.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10117 bytes
Input file size = 10987 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9009
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9009
Output IDAT size = 9009 bytes (1108 bytes decrease)
Output file size = 9087 bytes (1900 bytes = 17.29% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-10-4.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10489 bytes
Input file size = 11359 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9451
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9451
Output IDAT size = 9451 bytes (1038 bytes decrease)
Output file size = 9529 bytes (1830 bytes = 16.11% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-11-1.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11217 bytes
Input file size = 12087 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10091
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10091
Output IDAT size = 10091 bytes (1126 bytes decrease)
Output file size = 10169 bytes (1918 bytes = 15.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/coupled_oscillator_V05_files/figure-html/unnamed-chunk-11-2.png
480x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11958 bytes
Input file size = 12828 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10957
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10957
Output IDAT size = 10957 bytes (1001 bytes decrease)
Output file size = 11035 bytes (1793 bytes = 13.98% decrease)
--- finished re-building ‘coupled_oscillator_V05.Rmd’
--- re-building ‘inertia_coordination_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24265 bytes
Input file size = 24367 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18529
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18529
Output IDAT size = 18529 bytes (5736 bytes decrease)
Output file size = 18607 bytes (5760 bytes = 23.64% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23647 bytes
Input file size = 23749 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18137
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18137
Output IDAT size = 18137 bytes (5510 bytes decrease)
Output file size = 18215 bytes (5534 bytes = 23.30% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-3.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26948 bytes
Input file size = 27062 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20212
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20212
Output IDAT size = 20212 bytes (6736 bytes decrease)
Output file size = 20290 bytes (6772 bytes = 25.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-2-4.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26533 bytes
Input file size = 26647 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20054
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20054
Output IDAT size = 20054 bytes (6479 bytes decrease)
Output file size = 20132 bytes (6515 bytes = 24.45% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-1.png
432x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20357 bytes
Input file size = 20459 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14729
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14729
Output IDAT size = 14729 bytes (5628 bytes decrease)
Output file size = 14807 bytes (5652 bytes = 27.63% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-2.png
432x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16489 bytes
Input file size = 16591 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13379
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13379
Output IDAT size = 13379 bytes (3110 bytes decrease)
Output file size = 13457 bytes (3134 bytes = 18.89% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-3.png
432x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7946 bytes
Input file size = 8804 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7298
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7298
Output IDAT size = 7298 bytes (648 bytes decrease)
Output file size = 7376 bytes (1428 bytes = 16.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-4.png
432x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21978 bytes
Input file size = 22860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18256
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17641
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17641
Output IDAT size = 17641 bytes (4337 bytes decrease)
Output file size = 17719 bytes (5141 bytes = 22.49% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-8-5.png
432x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14722 bytes
Input file size = 15592 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13930
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13886
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13364
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12980
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12980
Output IDAT size = 12980 bytes (1742 bytes decrease)
Output file size = 13058 bytes (2534 bytes = 16.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-9-1.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7535 bytes
Input file size = 8393 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6900
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6900
Output IDAT size = 6900 bytes (635 bytes decrease)
Output file size = 6978 bytes (1415 bytes = 16.86% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-9-2.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16055 bytes
Input file size = 16925 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15070
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13721
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13498
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13498
Output IDAT size = 13498 bytes (2557 bytes decrease)
Output file size = 13576 bytes (3349 bytes = 19.79% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/inertia_coordination_V05_files/figure-html/unnamed-chunk-9-3.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13430 bytes
Input file size = 14300 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12609
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12389
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12149
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 12149
Output IDAT size = 12149 bytes (1281 bytes decrease)
Output file size = 12227 bytes (2073 bytes = 14.50% decrease)
--- finished re-building ‘inertia_coordination_V05.Rmd’
--- re-building ‘overview_data_prep_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/overview_data_prep_V05_files/figure-html/unnamed-chunk-8-1.png
480x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9599 bytes
Input file size = 10469 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8625
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8625
Output IDAT size = 8625 bytes (974 bytes decrease)
Output file size = 8703 bytes (1766 bytes = 16.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/overview_data_prep_V05_files/figure-html/unnamed-chunk-9-1.png
540x540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44293 bytes
Input file size = 44431 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
Output IDAT size = 40630 bytes (3663 bytes decrease)
Output file size = 40708 bytes (3723 bytes = 8.38% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/overview_data_prep_V05_files/figure-html/unnamed-chunk-9-2.png
540x540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44293 bytes
Input file size = 44431 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40630
Output IDAT size = 40630 bytes (3663 bytes decrease)
Output file size = 40708 bytes (3723 bytes = 8.38% decrease)
--- finished re-building ‘overview_data_prep_V05.Rmd’
--- re-building ‘sysVar_inOut_V05.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7117 bytes
Input file size = 7195 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5671
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5671
Output IDAT size = 5671 bytes (1446 bytes decrease)
Output file size = 5749 bytes (1446 bytes = 20.10% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13023 bytes
Input file size = 13113 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10753
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10753
Output IDAT size = 10753 bytes (2270 bytes decrease)
Output file size = 10831 bytes (2282 bytes = 17.40% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-3.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8180 bytes
Input file size = 9038 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7692
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7692
Output IDAT size = 7692 bytes (488 bytes decrease)
Output file size = 7770 bytes (1268 bytes = 14.03% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-4.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8230 bytes
Input file size = 9100 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7769
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7769
Output IDAT size = 7769 bytes (461 bytes decrease)
Output file size = 7847 bytes (1253 bytes = 13.77% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-5.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7949 bytes
Input file size = 8807 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7486
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7486
Output IDAT size = 7486 bytes (463 bytes decrease)
Output file size = 7564 bytes (1243 bytes = 14.11% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-6.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14380 bytes
Input file size = 15250 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13883
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13843
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11992
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11580
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11580
Output IDAT size = 11580 bytes (2800 bytes decrease)
Output file size = 11658 bytes (3592 bytes = 23.55% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-7.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14925 bytes
Input file size = 15795 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14434
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12362
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11928
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11928
Output IDAT size = 11928 bytes (2997 bytes decrease)
Output file size = 12006 bytes (3789 bytes = 23.99% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-1-8.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14653 bytes
Input file size = 15523 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14196
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14151
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12120
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11686
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11686
Output IDAT size = 11686 bytes (2967 bytes decrease)
Output file size = 11764 bytes (3759 bytes = 24.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-3-1.png
480x288 pixels, 8 bits/pixel, 249 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4133 bytes
Input file size = 4970 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3637
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3637
Output IDAT size = 3637 bytes (496 bytes decrease)
Output file size = 3715 bytes (1255 bytes = 25.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/rties.Rcheck/vign_test/rties/vignettes/sysVar_inOut_V05_files/figure-html/unnamed-chunk-3-2.png
480x288 pixels, 8 bits/pixel, 239 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2940 bytes
Input file size = 3747 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2385
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2373
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2373
Output IDAT size = 2373 bytes (567 bytes decrease)
Output file size = 2451 bytes (1296 bytes = 34.59% decrease)
Quitting from lines 63-64 [unnamed-chunk-5] (sysVar_inOut_V05.Rmd)
Error: processing vignette 'sysVar_inOut_V05.Rmd' failed with diagnostics:
Invalid option for argument `type`. Did you mean one of "fixed",
"zero_inflated", "zero_inflated_random", "simulate" or
"cumulative_hazard"? We even found 3 more possible matches, not shown
here. Otherwise, use one of the following options: "count", "random",
"zi_random", "zi_prob", "survival", "simulate_random", "debug" or
"quantile"
--- failed re-building ‘sysVar_inOut_V05.Rmd’
SUMMARY: processing the following file failed:
‘sysVar_inOut_V05.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc