Last updated on 2025-01-08 07:51:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 7.54 | 110.42 | 117.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 266.50 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 255.98 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 13.00 | 155.00 | 168.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 10.80 | 139.76 | 150.56 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 9.25 | 137.89 | 147.14 | OK | |
| r-release-macos-arm64 | 1.0.2 | 80.00 | OK | |||
| r-release-macos-x86_64 | 1.0.2 | 132.00 | OK | |||
| r-release-windows-x86_64 | 1.0.2 | 12.00 | 150.00 | 162.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 89.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.2 | 171.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 15.00 | 224.00 | 239.00 | OK |
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(singleCellHaystack)
>
> test_check("singleCellHaystack")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-haystack_continuous.R:17:3'): haystack continuous highD works ──
x$results["gene_24", "log.p.vals"] not equal to -25.7761.
1/1 mismatches
[1] -25.8 - -25.8 == -0.0012
── Failure ('test-haystack_continuous.R:31:3'): haystack continuous highD works ──
x$results["gene_24", "log.p.vals"] not equal to -20.65827.
1/1 mismatches
[1] -20.6 - -20.7 == 0.0262
── Failure ('test-haystack_sparse.R:21:3'): haystack works ─────────────────────
x$results["gene_1", "log.p.vals"] not equal to -0.4574128.
1/1 mismatches
[1] -0.455 - -0.457 == 0.00216
── Failure ('test-haystack_sparse.R:36:3'): haystack works ─────────────────────
x$results["gene_1", "D_KL"] not equal to 0.2716761.
1/1 mismatches
[1] 0.281 - 0.272 == 0.00979
── Failure ('test-haystack_sparse.R:37:3'): haystack works ─────────────────────
x$results["gene_1", "log.p.vals"] not equal to -0.4350106.
1/1 mismatches
[1] -0.47 - -0.435 == -0.0346
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_toy_example.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/singleCellHaystack.Rcheck/vign_test/singleCellHaystack/vignettes/a01_toy_example_files/figure-html/unnamed-chunk-2-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50634 bytes
Input file size = 50784 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36864
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36864
Output IDAT size = 36864 bytes (13770 bytes decrease)
Output file size = 36942 bytes (13842 bytes = 27.26% decrease)
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Quitting from lines 94-95 [unnamed-chunk-3] (a01_toy_example.Rmd)
Error: processing vignette 'a01_toy_example.Rmd' failed with diagnostics:
there is no package called 'ComplexHeatmap'
--- failed re-building ‘a01_toy_example.Rmd’
SUMMARY: processing the following file failed:
‘a01_toy_example.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang