CoDaLoMic: Compositional Models to Longitudinal Microbiome Data

Implementation of models to analyse compositional microbiome time series taking into account the interaction between groups of bacteria. The models implemented are described in Creus-Martí et al (2018, ISBN:978-84-09-07541-6), Creus-Martí et al (2021) <doi:10.1155/2021/9951817> and Creus-Martí et al (2022) <doi:10.1155/2022/4907527>.

Version:	0.1.0
Imports:	xtable, ggplot2, reshape2, compositions, MASS, broom, R2jags, ggbiplot, zCompositions
Suggests:	testthat (≥ 3.0.0), gtools, knitr, parallel, base
Published:	2025-01-20
DOI:	10.32614/CRAN.package.CoDaLoMic
Author:	Irene Creus Martí [aut, cre]
Maintainer:	Irene Creus Martí <ircrmar at mat.upv.es>
License:	GPL-3
NeedsCompilation:	no
CRAN checks:	CoDaLoMic results

Documentation:

Reference manual:

CoDaLoMic.pdf

Downloads:

Package source:	CoDaLoMic_0.1.0.tar.gz
Windows binaries:	r-devel: CoDaLoMic_0.1.0.zip, r-release: CoDaLoMic_0.1.0.zip, r-oldrel: CoDaLoMic_0.1.0.zip
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): CoDaLoMic_0.1.0.tgz, r-oldrel (x86_64): not available

Linking:

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