EvoPhylo: Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics

Performs automated morphological character partitioning for phylogenetic analyses and analyze macroevolutionary parameter outputs from clock (time-calibrated) Bayesian inference analyses, following concepts introduced by Simões and Pierce (2021) <doi:10.1038/s41559-021-01532-x>.

Version:	0.3.2
Depends:	R (≥ 4.0.0)
Imports:	ape (≥ 1.16.2), dplyr (≥ 1.0.8), cluster (≥ 2.1.2), deeptime (≥ 0.2.0), ggplot2 (≥ 3.3.5), ggrepel (≥ 0.9.1), ggtree (≥ 3.1.5.902), patchwork, treeio (≥ 1.16.2), Rtsne (≥ 0.15), unglue (≥ 0.1.0), devtools (≥ 2.4.3)
Suggests:	kableExtra, knitr, rmarkdown
Published:	2022-11-03
DOI:	10.32614/CRAN.package.EvoPhylo
Author:	Tiago Simoes [cre, aut], Noah Greifer [aut], Joelle Barido-Sottani [aut], Stephanie Pierce [aut]
Maintainer:	Tiago Simoes <trsimoes87 at gmail.com>
BugReports:	https://github.com/tiago-simoes/EvoPhylo/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/tiago-simoes/EvoPhylo, https://tiago-simoes.github.io/EvoPhylo/
NeedsCompilation:	no
Citation:	EvoPhylo citation info
Materials:	NEWS
In views:	Phylogenetics
CRAN checks:	EvoPhylo results

Documentation:

Reference manual:	EvoPhylo.pdf
Vignettes:	Character Partitioning Theoretical background Analyzing FBD Parameters Analyzing Trees With Offsets Evolutionary Rates & Selection Mode (BEAST2) Evolutionary Rates & Selection Mode (Mr.Bayes)

Downloads:

Package source:	EvoPhylo_0.3.2.tar.gz
Windows binaries:	r-devel: EvoPhylo_0.3.2.zip, r-release: EvoPhylo_0.3.2.zip, r-oldrel: EvoPhylo_0.3.2.zip
macOS binaries:	r-release (arm64): EvoPhylo_0.3.2.tgz, r-oldrel (arm64): EvoPhylo_0.3.2.tgz, r-release (x86_64): EvoPhylo_0.3.2.tgz, r-oldrel (x86_64): EvoPhylo_0.3.2.tgz
Old sources:	EvoPhylo archive

Linking:

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