Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids.
Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and
Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
| Version: |
1.1.0 |
| Depends: |
R (≥ 3.5.0), shinyBS |
| Imports: |
cowplot, doParallel, dplyr, DT, foreach, ggplot2, htmltools, parallel, processx, rlang, Rmixmod, shiny, shinythemes, tidyr |
| Published: |
2024-07-31 |
| DOI: |
10.32614/CRAN.package.GenoTriplo |
| Author: |
Julien Roche [aut, cre],
Florence Phocas [aut],
Mathieu Besson [aut],
Pierre Patrice [aut],
Marc Vandeputte [aut],
François Allal [aut],
Pierrick Haffray [aut] |
| Maintainer: |
Julien Roche <jjm.roche at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: |
no |
| CRAN checks: |
GenoTriplo results |