QurvE: Robust and User-Friendly Analysis of Growth and Fluorescence Curves
High-throughput analysis of growth curves and fluorescence data using three methods: linear regression, growth model fitting, and smooth spline fit. Analysis of dose-response relationships via smoothing splines or dose-response models. Complete data analysis workflows can be executed in a single step via user-friendly wrapper functions. The results of these workflows are summarized in detailed reports as well as intuitively navigable 'R' data containers. A 'shiny' application provides access to all features without requiring any programming knowledge. The package is described in further detail in Wirth et al. (2023) <doi:10.1038/s41596-023-00850-7>.
| Version: | 1.1.1 |
| Depends: | dplyr, methods, R (≥ 4.0), stringr, tidyr |
| Imports: | doParallel, drc, DT, foreach, ggh4x, ggnewscale, ggplot2, ggpubr, kableExtra, knitr, labeling, magrittr, minpack.lm, plyr, purrr, RColorBrewer, readxl, rmarkdown, scales, shiny, stats, utils |
| Suggests: | bookdown, Cairo, htmltools, plotrix, prettydoc, rlang, shinyBS, shinycssloaders, shinyFiles, shinyjs, shinysurveys, shinythemes, testthat (≥ 3.0.0), tibble, tinytex |
| Published: | 2024-01-26 |
| DOI: | 10.32614/CRAN.package.QurvE |
| Author: | Nicolas T. Wirth 
[aut, cre, cph],
Jonathan Funk [aut] (Co-developer of shiny app.),
Matthias Kahm [ctb] (Author of 'grofit' package, whose general data
structure was adopted for QurvE.),
Maik Kschischo [ctb] (Author of 'grofit' package, whose general data
structure was adopted for QurvE.),
Thomas Petzoldt
[ctb] (Creator of the package 'growthrates', whose function for
calculating linear regressions served as a template in QurvE.),
Andrew Stein [ctb] (Creator of 'xgxr' package from which QurvE adopted
code to plot axis ticks on log10 scale.),
Michael W. Kearney [ctb] (Creator of 'tfse' package from which QurvE
adopted the match_arg function.),
Santiago I. Hurtado [ctb] (Creator of 'RobustLinearReg' package from
which QurvE adopted the Theil Sehn Regression method.),
Mark Heckmann [ctb] (Creator of the 'zipFastener' function; source:
https://ryouready.wordpress.com/2009/03/27/r-zip-fastener-for-two-data-frames-combining-rows-or-columns-of-two-dataframes-in-an-alternating-manner/),
Nicholas Hamilton [ctb] (Creator of the 'colFmt' function.),
Evan Friedland [ctb] (Creator of the 'inflect' function.),
Heather Turner [ctb] (Creator of the 'base_breaks' function.),
Georgi N. Boshnakov [ctb] (Creator of 'gbRd' package from which
functions are used to display function help pages within the shiny
app.) |
| Maintainer: | Nicolas T. Wirth <mail.nicowirth at gmail.com> |
| BugReports: | https://github.com/NicWir/QurvE/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/NicWir/QurvE, https://nicwir.github.io/QurvE/ |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | QurvE results |
Documentation:
Downloads:
| Package source: | QurvE_1.1.1.tar.gz |
| Windows binaries: | r-devel: QurvE_1.1.1.zip, r-release: QurvE_1.1.1.zip, r-oldrel: QurvE_1.1.1.zip |
| macOS binaries: | r-release (arm64): QurvE_1.1.1.tgz, r-oldrel (arm64): QurvE_1.1.1.tgz, r-release (x86_64): QurvE_1.1.1.tgz, r-oldrel (x86_64): QurvE_1.1.1.tgz |
| Old sources: | QurvE archive |
Linking:
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