Functions for semi-automated quality control of bulk RNA-seq data.
Version: | 0.2.1 |
Depends: | R (≥ 4.0) |
Imports: | AnnotationHub, AnnotationFilter, BiocGenerics, ensembldb, circlize, DESeq2, SummarizedExperiment, ComplexHeatmap, matrixStats, grid, ggpointdensity, ggrepel, ggplot2, cowplot, patchwork, purrr, dplyr, stringr, tidyr, tibble, tidyselect, magrittr |
Suggests: | rmarkdown, knitr, recount3, apeglm, ggrastr, gghighlight |
Published: | 2024-07-15 |
DOI: | 10.32614/CRAN.package.RNAseqQC |
Author: | Frederik Ziebell [cre], Frederik Ziebell [aut], GlaxoSmithKline Research & Development Limited [cph] (GlaxoSmithKline Research & Development Limited; registered address: 980 Great West Road, Brentford, Middlesex TW8 9GS, United Kingdom) |
Maintainer: | Frederik Ziebell <f_ziebell at web.de> |
BugReports: | https://github.com/frederikziebell/RNAseqQC/issues |
License: | Apache License (≥ 2) |
URL: | https://github.com/frederikziebell/RNAseqQC |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | RNAseqQC results |
Reference manual: | RNAseqQC.pdf |
Vignettes: |
Creating The Example Data Set RNA-seq Quality Control |
Package source: | RNAseqQC_0.2.1.tar.gz |
Windows binaries: | r-devel: RNAseqQC_0.2.1.zip, r-release: RNAseqQC_0.2.1.zip, r-oldrel: RNAseqQC_0.2.1.zip |
macOS binaries: | r-release (arm64): RNAseqQC_0.2.1.tgz, r-oldrel (arm64): RNAseqQC_0.2.1.tgz, r-release (x86_64): RNAseqQC_0.2.1.tgz, r-oldrel (x86_64): RNAseqQC_0.2.1.tgz |
Old sources: | RNAseqQC archive |
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