Rtropical: Data Analysis Tools over Space of Phylogenetic Trees Using
Tropical Geometry
Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <doi:10.48550/arXiv.2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.
| Version: |
1.2.1 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ape, lpSolve, lpSolveAPI, parallel, Rfast, RcppAlgos, caret |
| Suggests: |
rmarkdown, knitr, e1071, testthat (≥ 3.0.0) |
| Published: |
2021-11-09 |
| DOI: |
10.32614/CRAN.package.Rtropical |
| Author: |
Houjie Wang [aut, cre],
Kaizhang Wang [aut],
Grady Weyenberg [aut],
Xiaoxian Tang [aut],
Ruriko Yoshida [aut] |
| Maintainer: |
Houjie Wang <wanghoujie6688 at gmail.com> |
| License: |
GPL-3 |
| URL: |
https://github.com/HoujieWang/Rtropical |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
Rtropical results |
Documentation:
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