Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.
Version: | 0.2.0 |
Depends: | R (≥ 3.6.0) |
Imports: | data.table, MASS, TPACData |
Published: | 2023-10-26 |
DOI: | 10.32614/CRAN.package.TPAC |
Author: | H. Robert Frost [aut, cre] |
Maintainer: | H. Robert Frost <rob.frost at dartmouth.edu> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
Materials: | NEWS |
CRAN checks: | TPAC results |
Reference manual: | TPAC.pdf |
Vignettes: |
TCGA liver cancer using MSigDB Hallmark collection example |
Package source: | TPAC_0.2.0.tar.gz |
Windows binaries: | r-devel: TPAC_0.2.0.zip, r-release: TPAC_0.2.0.zip, r-oldrel: TPAC_0.2.0.zip |
macOS binaries: | r-release (arm64): TPAC_0.2.0.tgz, r-oldrel (arm64): TPAC_0.2.0.tgz, r-release (x86_64): TPAC_0.2.0.tgz, r-oldrel (x86_64): TPAC_0.2.0.tgz |
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