Provides functions to run statistical analyses on surface-based neuroimaging data, computing measures including cortical thickness and surface area of the whole-brain and of the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep' and 'HCP' preprocessed datasets and 'HippUnfold' hippocampal segmentation outputs for a given sample by restructuring the data values into a single file. The single file can then be used by the package for analyses independently from its base dataset and without need for its access.
Version: | 1.1.0 |
Depends: | R (≥ 4.0.0) |
Imports: | ciftiTools, doParallel, doSNOW, foreach, freesurferformats, fs, gifti, grDevices, igraph, methods, plotly, png, rappdirs, reticulate, stats, stringr, utils |
Suggests: | R.rsp |
Published: | 2024-10-10 |
DOI: | 10.32614/CRAN.package.VertexWiseR |
Author: | Junhong Yu [aut], Charly Billaud [aut, cre] |
Maintainer: | Charly Billaud <charly.billaud at ntu.edu.sg> |
License: | GPL-3 |
URL: | https://cogbrainhealthlab.github.io/VertexWiseR/ |
NeedsCompilation: | no |
SystemRequirements: | Miniconda3 (v23.10.0); BrainStat (reticulate installation, v0.4.2); Numpy (v1.26.4) |
Materials: | README |
CRAN checks: | VertexWiseR results |
Reference manual: | VertexWiseR.pdf |
Vignettes: |
Example analyses with VertexWiseR - Example 1 (source) Example analyses with VertexWiseR - Example 2 (source) Extracting surface data in VertexWiseR (source) |
Package source: | VertexWiseR_1.1.0.tar.gz |
Windows binaries: | r-devel: VertexWiseR_1.1.0.zip, r-release: VertexWiseR_1.1.0.zip, r-oldrel: VertexWiseR_1.1.0.zip |
macOS binaries: | r-release (arm64): VertexWiseR_1.1.0.tgz, r-oldrel (arm64): VertexWiseR_1.1.0.tgz, r-release (x86_64): VertexWiseR_1.1.0.tgz, r-oldrel (x86_64): VertexWiseR_1.1.0.tgz |
Old sources: | VertexWiseR archive |
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