Release Notes

denovolyzeR 0.2.0

• Fixed a critical bug, whereby denovolyzeByGenes() returned incorrect output if user overrode default variant classes analysed (using includeClasses argument; column labels did not match data content)
  
• Updated underlying dependency from reshape to reshape2
  
• Changed output format so that all data is returned in columns. Previously either “gene” or “class” was returned as rownames of the output data structure.

denovolyzeR 0.1.1

• Correct minor errors in vignette
  
• Provide citation
  
• Address compatibility with updated dplyr 0.5.0

denovolyzeR 0.1.0

• This is the first release of denovolyzeR to CRAN

pre-release builds (0.0.0.9xxx)

• 2015-04-01: v0.0.0.9003
  new functionality includes analysis of sub-types of missense variation
  argument names and output formats are about to change: this development release serves to preserce a working version of the package using first draft argument names

• 2014-11-11: v0.0.0.9000 core statistical functionality is complete and ready for beta-testing
  main limitation is a lack of error-catching
  there may also be very minor modifications to underlying probability tables