ecostate: State-Space Mass-Balance Model for Marine Ecosystems
Fits a state-space mass-balance model for marine ecosystems, which implements dynamics derived from 'Ecopath with Ecosim' <https://ecopath.org/> while fitting to time-series of fishery catch, biomass indices, age-composition samples, and weight-at-age data. Package 'ecostate' fits biological parameters (e.g., equilibrium mass) and measurement parameters (e.g., catchability coefficients) jointly with residual variation in process errors, and can include Bayesian priors for parameters.
| Version: | 0.2.0 |
| Depends: | R (≥ 4.1.0), RTMB (≥ 1.5.0) |
| Imports: | TMB, MASS, checkmate, ggplot2, ggnetwork, igraph |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-11-25 |
| DOI: | 10.32614/CRAN.package.ecostate |
| Author: | James T. Thorson 
[aut, cre] |
| Maintainer: | James T. Thorson <James.Thorson at noaa.gov> |
| BugReports: | https://github.com/James-Thorson-NOAA/ecostate/issues |
| License: | GPL-3 |
| URL: | https://james-thorson-noaa.github.io/ecostate/ |
| NeedsCompilation: | no |
| Citation: | ecostate citation info |
| Materials: | README NEWS |
| CRAN checks: | ecostate results |
Documentation:
| Reference manual: | ecostate.pdf |
| Vignettes: |
Model of Intermediate Complexity (source, R code) |
Downloads:
| Package source: | ecostate_0.2.0.tar.gz |
| Windows binaries: | r-devel: ecostate_0.2.0.zip, r-release: ecostate_0.2.0.zip, r-oldrel: ecostate_0.2.0.zip |
| macOS binaries: | r-release (arm64): ecostate_0.2.0.tgz, r-oldrel (arm64): ecostate_0.2.0.tgz, r-release (x86_64): ecostate_0.2.0.tgz, r-oldrel (x86_64): ecostate_0.2.0.tgz |
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