epiworldR: Fast Agent-Based Epi Models
A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
| Version: | 0.3-2 |
| Imports: | utils |
| LinkingTo: | cpp11 |
| Suggests: | knitr, rmarkdown, tinytest, netplot, igraph, data.table |
| Published: | 2024-10-08 |
| DOI: | 10.32614/CRAN.package.epiworldR |
| Author: | George Vega Yon 
[aut, cre],
Derek Meyer [aut],
Susan Holmes
[rev] (JOSS reviewer),
Abinash Satapathy
[rev] (JOSS reviewer),
Carinogurjao [rev],
Centers for Disease Control and Prevention [fnd] (Award number
1U01CK000585; 75D30121F00003) |
| Maintainer: | George Vega Yon <g.vegayon at gmail.com> |
| BugReports: | https://github.com/UofUEpiBio/epiworldR/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/UofUEpiBio/epiworldR, https://uofuepibio.github.io/epiworldR/, https://uofuepibio.github.io/epiworldR-workshop/ |
| NeedsCompilation: | yes |
| Citation: | epiworldR citation info |
| Materials: | README NEWS |
| In views: | Epidemiology |
| CRAN checks: | epiworldR results |
Documentation:
| Reference manual: | epiworldR.pdf |
| Vignettes: |
Getting started with epiworldR (source, R code) Implementation details of epiworldR (source) Mixing models (source, R code) Run Multiple (source, R code) |
Downloads:
| Package source: | epiworldR_0.3-2.tar.gz |
| Windows binaries: | r-devel: epiworldR_0.3-2.zip, r-release: epiworldR_0.3-2.zip, r-oldrel: epiworldR_0.3-2.zip |
| macOS binaries: | r-release (arm64): epiworldR_0.3-2.tgz, r-oldrel (arm64): epiworldR_0.3-2.tgz, r-release (x86_64): epiworldR_0.3-2.tgz, r-oldrel (x86_64): epiworldR_0.3-2.tgz |
| Old sources: | epiworldR archive |
Reverse dependencies:
| Reverse imports: | epiworldRShiny |
Linking:
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