neurobase
neurobase
is back on.orient_rpi*
functionality to neurobase
rather than fslr
due to dependencies.fsl_std_file
.rpi*
functionality that uses RNifti
and is likely what we’d want to use.getForms
(and therefore a lot of stuff) with FSL version 6.0 and greater.quickshear_deface_image
to remove faces based on the QuickShear method and nipy/quickshear
.mridefacer
to add to the anonymization pipelines.invert_xfm
and other convert_xfm
functionality.fslreorient2std_mat
to get the matrix output from fslreorient2std
.face_removal_mask
for removal of faces, based on pydeface
.fslsmooth
to return an output file if retimg = FALSE
.reverse_rpi_orient_file
that was causing ERROR: Could not open file /usr/local/fsl/bin/fslswapdim: 107: [: =: unexpected operator
error.topup
to the exports.fsl_resample
.fsl_cluster
. Removed cluster
from exports due to conflicts.read_xfm
for reading transformations.mid_sagittal_align
for flipping.matrixStats
as unnecessary dependency.topup
and other DTI-based tools.susan
to work properly.fsleyes
in the future release.readnii
/writenii
Added readnii
and writenii
Added ortho_diff
Moved functions such as cal_img to oro.nifti package. They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.
Fixed fsl_biascorrect.