gquad: Prediction of G Quadruplexes and Other Non-B DNA Motifs

Genomic biology is not limited to the confines of the canonical B-forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.

Version:	2.1-2
Depends:	R (≥ 4.2.0)
Imports:	ape (≥ 5.6-2), seqinr (≥ 4.2-23)
Suggests:	knitr, rmarkdown
Published:	2022-11-29
DOI:	10.32614/CRAN.package.gquad
Author:	Hannah O. Ajoge
Maintainer:	Hannah O. Ajoge <ohuajo at gmail.com>
License:	Artistic-2.0
NeedsCompilation:	no
CRAN checks:	gquad results

Documentation:

Reference manual:	gquad.pdf
Vignettes:	Manuscript

Downloads:

Package source:	gquad_2.1-2.tar.gz
Windows binaries:	r-devel: gquad_2.1-2.zip, r-release: gquad_2.1-2.zip, r-oldrel: gquad_2.1-2.zip
macOS binaries:	r-release (arm64): gquad_2.1-2.tgz, r-oldrel (arm64): gquad_2.1-2.tgz, r-release (x86_64): gquad_2.1-2.tgz, r-oldrel (x86_64): gquad_2.1-2.tgz
Old sources:	gquad archive

Linking:

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