hmmTMB: Fit Hidden Markov Models using Template Model Builder
Fitting hidden Markov models using automatic differentiation
and Laplace approximation, allowing for fast inference and flexible covariate
effects (including random effects and smoothing splines) on model parameters.
The package is described by Michelot (2022) <doi:10.48550/arXiv.2211.14139>.
Version: |
1.0.2 |
Depends: |
R6, mgcv, TMB, ggplot2 |
Imports: |
Matrix, stringr, optimx, CircStats, MASS, tmbstan, methods |
LinkingTo: |
TMB, RcppEigen |
Suggests: |
rstan, testthat, knitr, moveHMM, scico, MSwM, unmarked |
Published: |
2023-10-24 |
DOI: |
10.32614/CRAN.package.hmmTMB |
Author: |
Theo Michelot [aut, cre],
Richard Glennie [aut, ctb] |
Maintainer: |
Theo Michelot <theo.michelot at dal.ca> |
License: |
GPL-3 |
URL: |
https://github.com/TheoMichelot/hmmTMB |
NeedsCompilation: |
yes |
Materials: |
README |
CRAN checks: |
hmmTMB results |
Documentation:
Downloads:
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