ipolygrowth: Individual Growth Curve Parameter Calculation using Polynomial Functions

Calculation of key bacterial growth curve parameters using fourth degree polynomial functions. Six growth curve parameters are provided including peak growth rate, doubling time, lag time, maximum growth, and etc. 'ipolygrowth' takes time series data from individual biological samples (with technical replicates) or multiple samples.

Version: 1.0.0
Depends: R (≥ 3.5.0)
Imports: dplyr, magrittr, rlang, tidyr, tidyselect
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), growthrates, kableExtra, ggplot2
Published: 2024-08-29
DOI: 10.32614/CRAN.package.ipolygrowth
Author: Jifan Wang ORCID iD [aut, cre, cph], Kathryn Barger [aut, cph]
Maintainer: Jifan Wang <wjifan at hotmail.com>
BugReports: https://github.com/kivanvan/ipolygrowth/issues
License: GPL (≥ 3)
URL: https://github.com/kivanvan/ipolygrowth
NeedsCompilation: no
Materials: README NEWS
CRAN checks: ipolygrowth results

Documentation:

Reference manual: ipolygrowth.pdf
Vignettes: Using ipolygrowth for bacterial growth estimation (source, R code)

Downloads:

Package source: ipolygrowth_1.0.0.tar.gz
Windows binaries: r-devel: ipolygrowth_1.0.0.zip, r-release: ipolygrowth_1.0.0.zip, r-oldrel: ipolygrowth_1.0.0.zip
macOS binaries: r-release (arm64): ipolygrowth_1.0.0.tgz, r-oldrel (arm64): ipolygrowth_1.0.0.tgz, r-release (x86_64): ipolygrowth_1.0.0.tgz, r-oldrel (x86_64): ipolygrowth_1.0.0.tgz
Old sources: ipolygrowth archive

Linking:

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