mt 2.0-1.1:
pca.outlier
: add prefix to ellipse to avoid conflict with package car.
mt 2.0-1.2:
corrgram.circle
and corrgram.ellipse
: move ‘scales’ into argument list.
mt 2.0-1.3:
cl.auc
: adjust auc: if (auc < 0.5) auc <- 1 - auc
mt 2.0-1.4: (14-05-2012)
accest
: Fix bugs and add more output.
mt 2.0-1.5: (16-05-2012)
cl.roc
: change output and fix bugs.
mt 2.0-1.6: (19-05-2012)
cl.roc
: add output of positive level.
cl.perf
: add confusion matrix, Kappa and positive outputs.
mt 2.0-1.7: (21-05-2012)
plsc
: minor changes for returned component pls.out so that R2 can be applied.
plslda
: minor changes for returned component pls.out so that R2 can be applied.
mt 2.0-1.8: (22-05-2012)
mt 2.0-1.9: (22-05-2013)
df.summ
: add dots argument and modify an user-defined function.
mt 2.0-1.10: (09-01-2014)
stats.vec
and stats.mat
: summarising two groups stats, such as p-values.
fs.cl.2
, perf
and perf.aam
: internal functions (21-01-2014).
mt 2.0-1.11: (22-01-2014)
- re-write
shrink.list
- add
proprec.auto
as hidden function and tidy up
mt 2.0-1.12: (07-08-2014)
- fix bug in
pval.reject
: add na.rm = TRUE
- change in
.grpplot
: remove xlab and ylab inside.
mt 2.0-1.13: (10-06-2015)
- two functions
mdsplot
and mds_plot_wrap
for MDS plotting.
mt 2.0-1.14: (16-07-2015)
- Re-write two functions for ellipse:
panel.elli
and panel.elli.1
- Provide
panel.outl
for labelling data points outside ellipse. They can be considered as outliers.
mt 2.0-1.15: (19-11-2015)
.path.package
is defunct so use path.package
instead in csv2xls
.
- Use
pls:::coef.mvr
replace coef.mvr
since it hides in the new version of ‘pls’.
mt 2.0-1.16: (30-11-2015)
- Add log2 fold-change for
stats.mat
and stats.vec
.
- Add adjusted p-values for
stats.mat
only.
- Provide documents for
pca.outlier
and pca.outlier.1
. The former is lattice version and the later is the basic graphics version.
mt 2.0-1.17: (26-01-2016)
- Remove returned values of “direction” in
stats.vec
and stats.mat
. So the results are numeric, not character.
mt 2.0-1.18: (06-11-2021)
- Replace
melt
and ddply
with base R functions. So no need to load two packages reshape
and plyr
.
- Move out some un-documented functions.
- Change CHANGELOG as NEWS.md
- Move packages from Depends to Imports in DESCRIPTION
- Spell check on R scripts using RStudio
mt 2.0-1.19: (31-01-2022)
- no changes but test against new version of randomForest 4.7.1 as requested.
mt 2.0-1.20: (12-02-2024)
- No changes but new R version of R complains S3 method in RD file. So change the dot as underscore for: pca_plot_wrap, mds_plot_wrap, lda_plot_wrap, lda_plot_wrap_1 and pls_plot_wrap. (probably ‘.plot’ is the problem)