This package implements the functions neeeded to perform
PACo
(Balbuena et al. 2013) in R
.
Balbuena, Juan Antonio, Raúl Míguez-Lozano, and Isabel Blasco-Costa. “PACo: A Novel Procrustes Application to Cophylogenetic Analysis.” PLoS ONE 8, no. 4 (2013): e61048. doi:10.1371/journal.pone.0061048.
Have a look at the manual, ?PACo
has a full example.
Note that the paco_links function returns the bias-corrected jackknife
estimates of each interaction’s residual rather than the mean and
confidence intervals of jackknife runs.