Calculates the amplification efficiency and curves from real-time quantitative PCR (Polymerase Chain Reaction) data. Estimates the relative expression from PCR data using the double delta CT and the standard curve methods Livak & Schmittgen (2001) <doi:10.1006/meth.2001.1262>. Tests for statistical significance using two-group tests and linear regression Yuan et al. (2006) <doi:10.1186/1471-2105-7-85>.
Version: | 1.2.2 |
Depends: | R (≥ 3.4.0) |
Imports: | ggplot2 |
Suggests: | testthat, knitr, rmarkdown, covr, cowplot |
Published: | 2020-04-01 |
DOI: | 10.32614/CRAN.package.pcr |
Author: | Mahmoud Ahmed [aut, cre] |
Maintainer: | Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg> |
BugReports: | https://github.com/MahShaaban/pcr/issues |
License: | GPL-3 |
URL: | https://github.com/MahShaaban/pcr |
NeedsCompilation: | no |
Citation: | pcr citation info |
Materials: | README NEWS |
CRAN checks: | pcr results |
Reference manual: | pcr.pdf |
Vignettes: |
Analysis of real-time qPCR data |
Package source: | pcr_1.2.2.tar.gz |
Windows binaries: | r-devel: pcr_1.2.2.zip, r-release: pcr_1.2.2.zip, r-oldrel: pcr_1.2.2.zip |
macOS binaries: | r-release (arm64): pcr_1.2.2.tgz, r-oldrel (arm64): pcr_1.2.2.tgz, r-release (x86_64): pcr_1.2.2.tgz, r-oldrel (x86_64): pcr_1.2.2.tgz |
Old sources: | pcr archive |
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