Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.
Version: | 2.1.0 |
Imports: | ape (≥ 4.0), methods, stats |
Suggests: | dendextend, knitr, rmarkdown, testthat |
Published: | 2018-06-25 |
DOI: | 10.32614/CRAN.package.phylogram |
Author: | Shaun Wilkinson [aut, cre], Simon Davy [aut] |
Maintainer: | Shaun Wilkinson <shaunpwilkinson at gmail.com> |
BugReports: | http://github.com/ropensci/phylogram/issues |
License: | GPL-3 |
URL: | http://github.com/ropensci/phylogram |
NeedsCompilation: | no |
Citation: | phylogram citation info |
Materials: | README |
In views: | Phylogenetics |
CRAN checks: | phylogram results |
Reference manual: | phylogram.pdf |
Vignettes: |
Introduction to the phylogram package |
Package source: | phylogram_2.1.0.tar.gz |
Windows binaries: | r-devel: phylogram_2.1.0.zip, r-release: phylogram_2.1.0.zip, r-oldrel: phylogram_2.1.0.zip |
macOS binaries: | r-release (arm64): phylogram_2.1.0.tgz, r-oldrel (arm64): phylogram_2.1.0.tgz, r-release (x86_64): phylogram_2.1.0.tgz, r-oldrel (x86_64): phylogram_2.1.0.tgz |
Old sources: | phylogram archive |
Reverse imports: | dclust, didec, insect, kmer |
Reverse suggests: | MoBPS |
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