Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
Version: | 1.0.0 |
Imports: | ggplot2, stringr, utils |
Suggests: | knitr, rmarkdown |
Published: | 2023-10-03 |
DOI: | 10.32614/CRAN.package.syntenyPlotteR |
Author: | Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut] |
Maintainer: | Marta Farre <m.farre-belmonte at kent.ac.uk> |
BugReports: | https://github.com/Farre-lab/syntenyPlotteR/issues |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Citation: | syntenyPlotteR citation info |
Materials: | README NEWS |
CRAN checks: | syntenyPlotteR results |
Reference manual: | syntenyPlotteR.pdf |
Vignettes: |
SyntenyPlotteR - a tool for genome synteny visualisation |
Package source: | syntenyPlotteR_1.0.0.tar.gz |
Windows binaries: | r-devel: syntenyPlotteR_1.0.0.zip, r-release: syntenyPlotteR_1.0.0.zip, r-oldrel: syntenyPlotteR_1.0.0.zip |
macOS binaries: | r-release (arm64): syntenyPlotteR_1.0.0.tgz, r-oldrel (arm64): syntenyPlotteR_1.0.0.tgz, r-release (x86_64): syntenyPlotteR_1.0.0.tgz, r-oldrel (x86_64): syntenyPlotteR_1.0.0.tgz |
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