toolStability: Tool for Stability Indices Calculation
Tools to calculate stability indices with parametric,
non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype.
Function "table_stability" offers the summary table of all stability indices in this package.
This R package toolStability is part of the main publication:
Wang, Casadebaig and Chen (2023) <doi:10.1007/s00122-023-04264-7>.
Analysis pipeline for main publication can be found on github: <https://github.com/Illustratien/Wang_2023_TAAG/tree/V1.0.0>.
Sample dataset in this package is derived from another publication:
Casadebaig P, Zheng B, Chapman S et al. (2016) <doi:10.1371/journal.pone.0146385>.
For detailed documentation of dataset, please see on Zenodo <doi:10.5281/zenodo.4729636>.
Indices used in this package are from:
Döring TF, Reckling M (2018) <doi:10.1016/j.eja.2018.06.007>.
Eberhart SA, Russell WA (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>.
Eskridge KM (1990) <doi:10.2135/cropsci1990.0011183X003000020025x>.
Finlay KW, Wilkinson GN (1963) <doi:10.1071/AR9630742>.
Hanson WD (1970) Genotypic stability. <doi:10.1007/BF00285245>.
Lin CS, Binns MR (1988) <https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018>.
Nassar R, Hühn M (1987).
Pinthus MJ (1973) <doi:10.1007/BF00021563>.
Römer T (1917).
Shukla GK (1972).
Wricke G (1962).
| Version: |
0.1.2 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
dplyr, data.table, Rdpack, nortest, stats |
| Suggests: |
testthat (≥ 3.0.0), ggplot2, knitr, rmarkdown, pkgdown, pander, XML, httr, RCurl, covr |
| Published: |
2023-03-13 |
| DOI: |
10.32614/CRAN.package.toolStability |
| Author: |
Tien-Cheng Wang [aut, cre],
Tsu-Wei Chen [com] |
| Maintainer: |
Tien-Cheng Wang <wangtien at student.hu-berlin.de> |
| BugReports: |
https://github.com/Illustratien/toolStability/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://illustratien.github.io/toolStability/,
https://link.springer.com/article/10.1007/s00122-023-04264-7,
https://github.com/Illustratien/toolStability,
https://github.com/Illustratien/Wang_2023_TAAG,
https://doi.org/10.5281/zenodo.4729636 |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| In views: |
Agriculture |
| CRAN checks: |
toolStability results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=toolStability
to link to this page.