Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
| Version: | 1.2.7 |
| Depends: | R (≥ 3.4.0), unmarked |
| Imports: | ggplot2 (≥ 2.0.0), gridExtra, loo, Matrix (≥ 1.5-0), methods, pbapply, Rcpp (≥ 0.12.0), reformulas, rlang, RSpectra, rstan (≥ 2.26.0), rstantools (≥ 2.0.0), stats |
| LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppArmadillo (≥ 0.9.300.2.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.26.0), StanHeaders (≥ 2.26.0), RcppParallel (≥ 5.0.2) |
| Suggests: | knitr, raster, rmarkdown, terra, testthat |
| Published: | 2024-10-01 |
| DOI: | 10.32614/CRAN.package.ubms |
| Author: | Ken Kellner [cre, aut] |
| Maintainer: | Ken Kellner <contact at kenkellner.com> |
| BugReports: | https://github.com/biodiverse/ubms/issues |
| License: | GPL (≥ 3) |
| URL: | https://biodiverse.github.io/ubms/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Citation: | ubms citation info |
| Materials: | NEWS |
| CRAN checks: | ubms results |
| Reference manual: | ubms.pdf |
| Vignettes: |
Comparing models fit in ubms and JAGS (source) Random effects in ubms (source) Spatial Models in ubms (source) Overview of ubms (source, R code) |
| Package source: | ubms_1.2.7.tar.gz |
| Windows binaries: | r-devel: ubms_1.2.7.zip, r-release: ubms_1.2.7.zip, r-oldrel: ubms_1.2.7.zip |
| macOS binaries: | r-release (arm64): ubms_1.2.7.tgz, r-oldrel (arm64): ubms_1.2.7.tgz, r-release (x86_64): ubms_1.2.7.tgz, r-oldrel (x86_64): ubms_1.2.7.tgz |
| Old sources: | ubms archive |
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