The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.
Version: | 0.6.0 |
Depends: | R (≥ 3.6.0) |
Imports: | Rcpp, methods, stats, utils |
LinkingTo: | Rcpp |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2024-09-29 |
DOI: | 10.32614/CRAN.package.vcfppR |
Author: | Zilong Li [aut, cre], Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas and Davies, Robert M [cph] (Authors of included htslib library) |
Maintainer: | Zilong Li <zilong.dk at gmail.com> |
BugReports: | https://github.com/Zilong-Li/vcfppR/issues |
License: | MIT + file LICENSE |
Copyright: | See the file COPYRIGHTS for various htslib copyright details vcfppR copyright details |
URL: | https://github.com/Zilong-Li/vcfppR |
NeedsCompilation: | yes |
SystemRequirements: | libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb), GNU make. |
Citation: | vcfppR citation info |
Materials: | README NEWS |
CRAN checks: | vcfppR results |
Reference manual: | vcfppR.pdf |
Vignettes: |
Assess the concordance between VCFs (source, R code) |
Package source: | vcfppR_0.6.0.tar.gz |
Windows binaries: | r-devel: vcfppR_0.6.0.zip, r-release: vcfppR_0.6.0.zip, r-oldrel: vcfppR_0.6.0.zip |
macOS binaries: | r-release (arm64): vcfppR_0.6.0.tgz, r-oldrel (arm64): vcfppR_0.6.0.tgz, r-release (x86_64): vcfppR_0.6.0.tgz, r-oldrel (x86_64): vcfppR_0.6.0.tgz |
Old sources: | vcfppR archive |
Please use the canonical form https://CRAN.R-project.org/package=vcfppR to link to this page.