Calculate Bark Beetle Phenology Using Different Models

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Documentation for package ‘barrks’ version 1.1.0

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analyse.phenology Analyse a phenology
analyse.phenology.bso Analyse a BSO generated phenology
barrks_colors Get 'barrks' default color palettes
barrks_data Load sample data
barrks_labels Get 'barrks' default legend labels
bso_get_flight Get flight of individuals (BSO only)
bso_get_flight_df Get flight of individuals (BSO only)
bso_get_flight_rst Get flight of individuals (BSO only)
bso_get_individuals Get individuals (BSO only)
bso_get_individuals_df Get individuals (BSO only)
bso_get_individuals_rst Get individuals (BSO only)
bso_phenology Central function to calculate a phenology
bso_plot_flight_diagram Plot a flight diagram (BSO only)
bso_plot_stage_diagram Plot a stage diagram (BSO only)
bso_translate_phenology Translate BSO generated phenology
categorize_generations_rst Make a numeric generations raster categorical
create_daylength_df Create a data frame of day lengths
create_daylength_rst Create day length rasters
create_diapause Create phenological events (onset/diapause/mortality)
create_events Create phenological events (onset/diapause/mortality)
create_mortality Create phenological events (onset/diapause/mortality)
create_onset Create phenological events (onset/diapause/mortality)
create_suntimes_df Create a data frame of sunrises and sunsets
create_suntimes_rsts Create rasters that indicate sunrise and sunset
get_development Get the beetles development
get_development_df Get the beetles development
get_development_rst Get the beetles development
get_diapause Get onset, diapause or mortality
get_diapause_df Get onset, diapause or mortality
get_diapause_rst Get onset, diapause or mortality
get_events Get onset, diapause or mortality
get_generations Get generations
get_generations_df Get generations
get_generations_rst Get generations
get_hibernating_generations_df Get generations
get_hibernating_generations_rst Get generations
get_input_data Get (preprocessed) input data
get_mortality Get onset, diapause or mortality
get_mortality_df Get onset, diapause or mortality
get_mortality_rst Get onset, diapause or mortality
get_onset Get onset, diapause or mortality
get_onset_df Get onset, diapause or mortality
get_onset_rst Get onset, diapause or mortality
list_models List all models
load_phenology Save/load a phenology
model Get a phenology model
model.bso.apply Use BSO
model.bso.customize Customize BSO
model.chapy.apply Use CHAPY
model.chapy.customize Customize CHAPY
model.joensson.apply Use the Jönnson model
model.joensson.customize Customize the Jönsson model
model.lange.apply Use the Lange model
model.lange.customize Customize the Lange model
model.phenips.apply Use PHENIPS
model.phenips.customize Customize PHENIPS
model.phenips_clim.apply Use PHENIPS-Clim
model.phenips_clim.customize Customize PHENIPS-Clim
model.rity.apply Use RITY
model.rity.customize Customize RITY
model_combine Combine different (sub-)models
params Get model parameters
phenology Central function to calculate a phenology
plot_development_diagram Plot a development diagram
properties Get phenology properties
prop_dates Get phenology properties
prop_filial_generations Get phenology properties
prop_first_date Get phenology properties
prop_hatched_generations Get phenology properties
prop_last_date Get phenology properties
prop_sister_broods Get phenology properties
prop_stations Get phenology properties
prop_year Get phenology properties
save_load_phenology Save/load a phenology
save_phenology Save/load a phenology
stations Work with stations
stations_assign Work with stations
stations_cells Work with stations
stations_create Work with stations
stations_names Work with stations