Adaptive Generalized PCA
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Documentation for package ‘adaptiveGPCA’ version 0.1.3
Help Pages
| adaptiveGPCA-package | adaptiveGPCA: A package for structured dimensionality reduction |
| adaptivegpca | Adaptive gPCA |
| AntibioticPhyloseq | Antibiotic time course experiment. |
| AntibioticSmall | A subset of the antibiotic data |
| estimateComponents | Estimate parameters in hierarchical model |
| gpca | gPCA |
| gpcaFullFamily | Make a sequence of ordinations |
| inspectTaxonomy | Shiny gadget for tree/taxonomy inspection |
| plot.adaptivegpca | Plot an adaptivegpca object |
| print.adaptivegpca | Print an adaptivegpca object |
| processPhyloseq | Make the input matrices for adaptive gPCA |
| varianceOnEvecs | Variance along eigenvectors of Q |
| visualizeFullFamily | Shiny gadget for adaptive gPCA |