mvMORPH-package |
Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data |
aicw |
Akaike weights |
coef.mvgls |
Extract multivariate gls model coefficients |
EIC |
Extended Information Criterion (EIC) to compare models fit with 'mvgls' by Maximum Likelihood (ML) or Penalized Likelihood (PL). |
estim |
Ancestral states reconstructions and missing value imputation with phylogenetic/time-series models |
fitted.mvgls |
Extract multivariate gls model fitted values |
GIC |
Generalized Information Criterion (GIC) to compare models fit with 'mvgls' by Maximum Likelihood (ML) or Penalized Likelihood (PL). |
halflife |
The phylogenetic half-life for an Ornstein-Uhlenbeck process |
LRT |
Likelihood Ratio Test |
manova.gls |
Multivariate Analysis of Variance |
mv.Precalc |
Model parameterization for the various mvMORPH functions |
mvBM |
Multivariate Brownian Motion models of continuous traits evolution |
mvEB |
Multivariate Early Burst model of continuous traits evolution |
mvgls |
Fit linear model using Generalized Least Squares to multivariate (high-dimensional) data sets. |
mvgls.dfa |
Discriminant Function Analysis (DFA) - also called Linear Discriminant Analysis (LDA) or Canonical Variate Analysis (CVA) - based on multivariate GLS model fit |
mvgls.pca |
Principal Component Analysis (PCA) based on GLS estimate of the traits variance-covariance matrix (possibly regularized). |
mvLL |
Multivariate (and univariate) algorithms for log-likelihood estimation of arbitrary covariance matrix/trees |
mvMORPH |
Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data |
mvOU |
Multivariate Ornstein-Uhlenbeck model of continuous traits evolution |
mvOUTS |
Multivariate continuous trait evolution for a stationary time series (Ornstein-Uhlenbeck model) |
mvRWTS |
Multivariate Brownian motion / Random Walk model of continuous traits evolution on time series |
mvSHIFT |
Multivariate change in mode of continuous trait evolution |
mvSIM |
Simulation of (multivariate) continuous traits on a phylogeny |
phyllostomid |
Phylogeny and trait data for a sample of Phyllostomid bats |
predict.mvgls |
Predictions from (multivariate) gls model fit |
pruning |
Pruning algorithm to compute the square root of the phylogenetic covariance matrix and it's determinant. |
residuals.mvgls |
Extract gls model residuals |
stationary |
The stationary variance of an Ornstein-Uhlenbeck process |
vcov.mvgls |
Calculate variance-covariance matrix for a fitted object of class 'mvgls' |