Data Package for 'pathfindR'


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Documentation for package ‘pathfindR.data’ version 1.1.2

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biocarta_descriptions BioCarta Pathways - Descriptions
biocarta_genes BioCarta Pathways - Gene Sets
biogrid_adj_list BioGRID PIN Adjacency List
cell_markers_descriptions Human Cell Markers - Descriptions
cell_markers_gsets Human Cell Markers - Gene Sets
custom_result Custom Gene Set Enrichment Results
example_active_snws Example Active Subnetworks
genemania_adj_list GeneMania PIN Adjacency List
go_all_genes Gene Ontology - All Gene Ontology Gene Sets
GO_all_terms_df Gene Ontology - All Gene Ontology Descriptions
intact_adj_list IntAct PIN Adjacency List
kegg_adj_list KEGG PIN Adjacency List
kegg_descriptions KEGG Pathways - Descriptions
kegg_genes KEGG Pathways - Gene Sets
mmu_kegg_descriptions Mus Musculus KEGG Pathways - Descriptions
mmu_kegg_genes Mus Musculus KEGG Pathways - Gene Sets
mmu_string_adj_list Mus musculus STRING PIN Adjacency List
myeloma_input Example Input for Myeloma Analysis (Mus Musculus)
myeloma_output Example Output for Myeloma Analysis (Mus Musculus)
pathfindR.data_updates Table of Data for pathfindR
RA_clustered Example Output for the pathfindR Clustering Workflow - Rheumatoid Arthritis
RA_comparison_output Second Example Output for the pathfindR Enrichment Workflow
RA_exp_mat Example Input for pathfindR - Enriched Term Scoring
RA_input Example Input for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
RA_output Example Output for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
reactome_descriptions Reactome Pathways - Descriptions
reactome_genes Reactome Pathways - Gene Sets
string_adj_list STRING PIN Adjacency List