.cctm | Create a 'conditional' ctm model with random effects as offsets |
.idx | Get parameter indices of various structures |
.parallel_default | Boilerplate parallel-handling function, modified from 'glmmTMB' |
anova.tramME | Comparison of nested tramME models. |
BoxCoxME | Mixed-effects version of 'BoxCox' |
coef.LmME | Extract the coefficients of the fixed effects terms of an LmME model. |
coef.SurvregME | Extract the coefficients of the fixed effects terms of an SurvregME model. |
coef.tramME | Extract the coefficients of the fixed effects terms. |
coef<-.tramME | Set coefficients of a tramME model. |
ColrME | Mixed-effects version of 'Colr' |
confint.LmME | Confidence intervals for LmME model parameters |
confint.tramME | Confidence intervals for tramME model parameters |
CoxphME | Mixed-effects version of 'Coxph' |
duplicate | Generic for copying objects that are (partly) modified in place |
duplicate.tramTMB | Create a duplicate of the tramTMB object |
edf_smooth | Calculate edf for smooth terms |
edf_smooth.tramME | EDFs of smooth shift terms |
fitmod | Fit the model. |
fitmod.tramME | Call the optimizer on a tramME object |
is.pd | Check positive definiteness |
LehmannME | Mixed-effects version of 'Lehmann' |
LmME | Mixed-effects version of 'Lm' |
logLik.tramME | Get the log-likelihood of the tramME model |
model.frame.tramME | Extract model frame from a tramME model |
model.matrix.tramME | Model matrices for 'tramME' models |
offset | Generic method for '"offset"' |
offset.default | Default method for '"offset"' |
offset.tramME | Get the offset vector of a tramME object. |
offset<- | Generic method for '"offset<-"' |
offset<-.tramME | Set the values of the offsets of a tramME model. |
optim_control | Set up and control optimization parameters |
optim_tramTMB | Optimize the tramTMB object |
plot.smooth.tramME | Plot smooth terms of a tramME model. |
plot.tramME | Plotting method for tramME objects |
PolrME | Mixed-effects version of 'Polr' |
predict.tramME | Predict method for tramME objects |
predict.tramTMB | Post-estimation calculations in a tramTMB model |
print.anova.tramME | Printing 'anova.tramME' table |
print.summary.tramME | Print method for tramME model summary |
print.tramME | Print tramME model |
print.VarCorr.tramME | Print method for the variance-correlation parameters of a tramME object |
ranef | Point estimates and conditional variances of random effects. |
ranef.LmME | Extract the conditional modes of random effects of an LmME model |
ranef.tramME | Point estimates and conditional variances of random effects. |
residuals.LmME | Residuals of a LmME model |
residuals.tramME | Residuals of a tramME model |
sigma.LmME | Extract the SD of the error term of an LmME model. |
smooth_terms | Get smooth terms. |
smooth_terms.LmME | Evaluate smooth terms of a 'LmME' model. |
smooth_terms.tramME | Extract and evaluate the smooth terms of a tramME model |
summary.tramME | Summary method for tramME model |
SurvregME | Mixed-effects version of 'Survreg' |
tramME | General function to define and fit tramME models |
tramME_model | Create an object that defines a tramME_model |
tramTMB | Create a tramTMB object |
VarCorr | Variances and correlation matrices of random effects |
VarCorr.LmME | Variances and correlation matrices of random effects of an LmME object |
VarCorr.tramME | Variances and correlation matrices of random effects |
varcov | Generic method for 'varcov' |
varcov.LmME | Extract the variance-covariance matrix of the random effects of an LmME model |
varcov.tramME | Extract the variance-covariance matrix of the random effects |
varcov<- | Generic method for '"varcov<-"' |
varcov<-.tramME | Set the values of the random effects covariance matrices of a tramME model. |
variable.names.tramME | Return variable names. |
vcov.LmME | Get the variance-covariance matrix of the parameters of an LmME model |
vcov.tramME | Calculate the variance-covariance matrix of the parameters |
vcov.tramTMB | Variance-covariance matrix of the parameters |
weights.tramME | Get the observation weight vector of a tramME object. |
weights<- | Generic method for '"weights<-"' |
weights<-.tramME | Set the values of the observation weights of a tramME model. |