# Post-Processing of Markov Chain Monte Carlo Simulations for Chronological Modelling

## Documentation for package ‘ArchaeoPhases’ version 2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

activity | Activity Plot
activity-method | Activity Plot
allen_analyze | Analyze Composite Allen Relations
allen_complement | Complement of an Allen Relation
allen_complement-method | Complement of an Allen Relation
allen_composition | Composition of Allen Relations
allen_composition-method | Composition of Allen Relations
allen_converse | Converse of an Allen Relation
allen_converse-method | Converse of an Allen Relation
allen_illustrate | Illustrate Basic and Composite Allen Relations
allen_intersect | Intersection of Allen Relations
allen_intersect-method | Intersection of Allen Relations
allen_joint_concurrency | Joint Concurrence of Two or More Observed Intervals
allen_joint_concurrency-method | Joint Concurrence of Two or More Observed Intervals
allen_observe | Observe the Relation Between two Phases
allen_observe-method | Observe the Relation Between two Phases
allen_observe_frequency | Observed Frequency of an Allen Set
allen_observe_frequency-method | Observed Frequency of an Allen Set
allen_relation | Allen Relation Between Definite Intervals
allen_relation-method | Allen Relation Between Definite Intervals
allen_relation_code | The Basic Allen Relation Set
allen_relation_concurrent | The Basic Allen Relation Set
allen_relation_distinct | The Basic Allen Relation Set
allen_relation_string | The Basic Allen Relation Set
allen_union | Union of Allen Relations
allen_union-method | Union of Allen Relations
as.data.frame-method | Coerce to a Data Frame
as_coda | Coerce to Coda
as_coda-method | Coerce to Coda
as_events | Coerce to Events
as_events-method | Coerce to Events
as_phases | Coerce to Phases
as_phases-method | Coerce to Phases
bind | Combine two MCMC Objects
boundaries | Phase Time Range
boundaries-method | Phase Time Range
bury | Age-Depth Modeling
bury-method | Age-Depth Modeling
cbind2-method | Combine two MCMC Objects
check | Check for an Original MCMC File
data.frame | Coerce to a Data Frame
duration | Phase Duration
duration-method | Phase Duration
elapse | Elapsed Time Scale
elapse-method | Elapsed Time Scale
hiatus | Hiatus Between Two Dates
hiatus-method | Hiatus Between Two Dates
interpolate | Interpolate Between Two Dates
interpolate-method | Interpolate Between Two Dates
interval_credible | Bayesian Credible Interval
interval_credible-method | Bayesian Credible Interval
interval_hdr | Bayesian HPD Regions
interval_hdr-method | Bayesian HPD Regions
is_original | Check for an Original MCMC File
is_original-method | Check for an Original MCMC File
mcmc_events | Events
mcmc_phases | Phases
names | The Names of an Object
names-method | The Names of an Object
names<--method | The Names of an Object
occurrence | Occurrence Plot
occurrence-method | Occurrence Plot
older | Bayesian Test for Anteriority/Posteriority
older-method | Bayesian Test for Anteriority/Posteriority
phases | Compute Phases
phases-method | Compute Phases
plot-method | Activity Plot
plot-method | Age-Depth Modeling
plot-method | Occurrence Plot
plot-method | Plot Events
plot-method | Plot Phases
plot-method | Tempo Plot
plot_events | Plot Events
plot_phases | Plot Phases
predict-method | Age-Depth Modeling
read_bcal | Read BCal Output
read_bcal-method | Read BCal Output
read_chronomodel | Read ChronoModel Output
read_chronomodel-method | Read ChronoModel Output
read_chronomodel_events | Read ChronoModel Output
read_chronomodel_events-method | Read ChronoModel Output
read_chronomodel_phases | Read ChronoModel Output
read_chronomodel_phases-method | Read ChronoModel Output
read_oxcal | Read OxCal Output
read_oxcal-method | Read OxCal Output
sensitivity | Sensitivity
sensitivity-method | Sensitivity
sort | Sort an MCMC Object
sort-method | Sort an MCMC Object
sort.list | Ordering Permutation of an MCMC Object
sort.list-method | Ordering Permutation of an MCMC Object
subset | Extract or Replace Parts of an Object
summary | Marginal Summary Statistics for Multiple MCMC Chains
summary-method | Marginal Summary Statistics for Multiple MCMC Chains
tempo | Tempo Plot
tempo-method | Tempo Plot
transition | Transition Range Between Successive Phases
transition-method | Transition Range Between Successive Phases
[-method | Extract or Replace Parts of an Object