Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface


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Documentation for package ‘VertexWiseR’ version 1.2.0

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atlas_to_surf Atlas to surface
CAT12vextract CAT12vextract
decode_surf_data Decode surface data
edgelist-class Edge list object
edgelist_hip List of edges for the hippocampal template
fs5_to_fs6 fsaverage5 to fsaverage6
fs6_to_fs5 fsaverage6 to fsaverage5
fs6_to_fs5_map fsaverage6 template object for nearest neighbor conversion in fs6_to_fs5()
FSLRvextract FSLRvextract
fs_stats fs_stats()
HIPvextract HIPvextract
hip_points_cells points and cells data required to build the hippocampus surface template
MNImap_hip Hippocampal surface in MNI space
MNIsurface-class MNI surface map object
plot_surf Surface plotter
plot_surf3d 3D Surface plotter
RFT_vertex_analysis Vertex-wise analysis with random field theory cluster correction
ROImap-class Region-of-Interest mapping object
ROImap_fs5 Atlas parcellations of fsaverage5
ROImap_fs6 Atlas parcellations of fsaverage6
ROImap_fslr32k Atlas parcellations of FS_LR32k
ROImap_hip Atlas parcellations of the hippocampus (CITI168)
smooth_surf Smooth surface
SURFvextract SURFvextract
surf_to_atlas Surface to atlas
surf_to_vol Surface to volume
TFCE_threshold Thresholding TFCE output
TFCE_vertex_analysis Vertex-wise analysis with threshold-free cluster enhancement (fixed effect)
TFCE_vertex_analysis_mixed Vertex-wise analysis with threshold-free cluster enhancement (mixed effect)
VWRfirstrun VertexWiseR system requirements installation