A Statistical Framework for Comparing Sets of Trees


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Documentation for package ‘mixtree’ version 0.0.1

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abouheif Compute the Abouheif distance matrix
chisq_test Perform Chi-Square Test on Sets of Transmission Trees
euclidean Calculate the Euclidean distance between two distance matrices.
kendall Compute the Kendall distance matrix
make_tree Generate a Transmission Tree
patristic Compute the Patristic distance matrix
permanova_test Perform PERMANOVA on Sets of Transmission Trees
shuffle_graph_ids Shuffle Node IDs in a Graph
tree_test Test Differences Between Sets of Transmission Trees
validate_tree Validate a Transmission Tree