Common Computational Operations Working with RefSeq Entries (GenBank)


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Documentation for package ‘refseqR’ version 1.0.2

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refseqR-package refseqR: Common computational operations working with GenBank
refseqR refseqR: Common computational operations working with GenBank
refseq_AAseq Extract the amino acid sequence into a Biostrings object
refseq_CDScoords Extract the coding sequences (CDS) coordinates from a XM accession
refseq_CDSseq Extract the CDS nucleotide sequence into a Biostrings object
refseq_description Get the sequence Description
refseq_fromGene Get the mRNA or protein accession
refseq_fromXM Get mRNA features
refseq_geneSymbol Get the gene symbol
refseq_mol_wt Extract the molecular weigth from an XP accession
refseq_XMfromXP Get the XM accession from XP accession
refseq_XPfromXM Get the XP accession from XM accession
refseq_XPlength Get the protein length from an XP accession