scorematchingad-package |
scorematchingad: Score Matching Estimation by Automatic Differentiation |
ADFun |
A Class for CppAD Tapes |
Bingham |
Score Matching Estimators for the Bingham Distribution |
cppad_closed |
Score Matching Estimator for Quadratic-Form Score Matching Discrepancies |
cppad_search |
Iterative Score Matching Estimator Using Conjugate-Gradient Descent |
dppi |
Improper Log-Density of the PPI Model |
evaltape |
Evaluate a CppAD Tape Many Times |
evaltape_wsum |
Evaluate a CppAD Tape Many Times |
FB |
Estimate the Fisher-Bingham Distribution |
microbiome |
16s Microbiome Data for Soil-Transmitted Helminths |
ppi |
Estimation of Polynomially-Tilted Pairwise Interaction (PPI) Model |
ppi_cW |
Quickly Generate a Vector of Windham Exponents for the PPI Model |
ppi_cW_auto |
Quickly Generate a Vector of Windham Exponents for the PPI Model |
ppi_fromAstar |
PPI Parameter Tools |
ppi_mmmm |
A PPI Score-Matching Marginal Moment Matching Estimator (dimension=3 only) |
ppi_parammats |
PPI Parameter Tools |
ppi_paramvec |
PPI Parameter Tools |
ppi_param_tools |
PPI Parameter Tools |
ppi_robust |
Robustly Estimate Parameters of the PPI Distribution |
ppi_robust_alrgengamma |
Robustly Estimate Parameters of the PPI Distribution |
ppi_smvalues |
Estimation of Polynomially-Tilted Pairwise Interaction (PPI) Model |
ppi_toAstar |
PPI Parameter Tools |
print,Rcpp_ADFun |
Print or show a summary of an Rcpp_ADFun |
print-method |
Print or show a summary of an Rcpp_ADFun |
quadratictape_parts |
Evaluate the Hessian and Gradient Offset of a Taped Quadratic Function |
Rcpp_ADFun |
A Class for CppAD Tapes |
Rcpp_ADFun-class |
A Class for CppAD Tapes |
rppi |
Simulate from a PPI Model |
rppi_egmodel |
Simulate from a PPI Model |
rsymmetricmatrix |
Quickly Generate a Symmetric Matrix for Testing and Examples |
scorematchingad |
scorematchingad: Score Matching Estimation by Automatic Differentiation |
scorematchingtheory |
Introduction to Score Matching |
show-method |
Print or show a summary of an Rcpp_ADFun |
smvalues |
Compute Score Matching Discrepancy Value, Gradient, and Hessian |
smvalues_wsum |
Compute Score Matching Discrepancy Value, Gradient, and Hessian |
tape_gradoffset |
Tape the Gradient Offset of a Quadratic CppAD Tape |
tape_Hessian |
Tape the Hessian of a CppAD Tape |
tape_Jacobian |
Tape the Jacobian of CppAD Tape |
tape_logJacdet |
Tape the log of Jacobian determinant of a CppAD Tape |
tape_smd |
Build CppAD Tapes for Score Matching |
tape_swap |
Switch Dynamic and Independent Values of a Tape |
tape_uld |
Generate a tape of a custom unnormalised log-density |
tape_uld_inbuilt |
Generate a tape of a custom unnormalised log-density |
testquadratic |
Test Whether a CppAD Tape is a Quadratic Function |
vMF |
Score Matching Estimator for the von-Mises Fisher Distribution |
vMF_robust |
Robust Fitting of von Mises Fisher |
Windham |
Windham Robustification of Point Estimators for Exponential Family Distributions |
Windham_populationinverse |
Inverse Transform for the Population Parameters Under Windham Weights |
Windham_populationinverse_alternative |
Inverse Transform for the Population Parameters Under Windham Weights |