cleanIncremental | Removes csv files from folders that have not been marked as completed and removes the record of the execution file |
cleanNonIncremental | Removes csv files from the execution folder as there should be no csv files when running in non-incremental model |
computeDechallengeRechallengeAnalyses | Compute dechallenge rechallenge study |
computeRechallengeFailCaseSeriesAnalyses | Compute fine the subjects that fail the dechallenge rechallenge study |
computeTimeToEventAnalyses | Compute time to event study |
createAggregateCovariateSettings | Create aggregate covariate study settings |
createCharacterizationSettings | Create the settings for a large scale characterization study |
createCharacterizationTables | Create the results tables to store characterization results into a database |
createDechallengeRechallengeSettings | Create dechallenge rechallenge study settings |
createDuringCovariateSettings | Create during covariate settings |
createSqliteDatabase | Create an sqlite database connection |
createTimeToEventSettings | Create time to event study settings |
exampleOmopConnectionDetails | create a connection detail for an example GI Bleed dataset from Eunomia |
getDbDuringCovariateData | Extracts covariates that occur during a cohort |
insertResultsToDatabase | Upload the results into a result database |
loadCharacterizationSettings | Load the characterization settings previously saved as a json file |
runCharacterizationAnalyses | execute a large-scale characterization study |
saveCharacterizationSettings | Save the characterization settings as a json |
viewCharacterization | viewCharacterization - Interactively view the characterization results |