Robust Copy Number Alteration Detection (RCNA)


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Documentation for package ‘RCNA’ version 1.0

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correct_gc_bias correct_gc_bias: Estimate and correct GC bias in coverage
correct_gc_bias.default correct_gc_bias: Estimate and correct GC bias in coverage
correct_gc_bias.RCNA_object correct_gc_bias: Estimate and correct GC bias in coverage
create_RCNA_object RCNA_object constructor
estimate_feature_score estimate_feature_score: Estimate CNV score for each gene in the annotation file
estimate_feature_score.default estimate_feature_score: Estimate CNV score for each gene in the annotation file
estimate_feature_score.RCNA_object estimate_feature_score: Estimate CNV score for each gene in the annotation file
estimate_nkr estimate_nkr: Estimate CNA "normal" karyotype ranges
estimate_nkr.default estimate_nkr: Estimate CNA "normal" karyotype ranges
estimate_nkr.RCNA_object estimate_nkr: Estimate CNA "normal" karyotype ranges
example_obj Example RCNA_object
RCNA_analysis RCNA_analysis constructor
RCNA_analysis-class RCNA_analysis constructor
RCNA_object RCNA.object definition
RCNA_object-class RCNA.object definition
run_RCNA run_RCNA: Perform RCNA copy number detection workflow
run_RCNA.default run_RCNA: Perform RCNA copy number detection workflow
run_RCNA.RCNA_object run_RCNA: Perform RCNA copy number detection workflow